6GRW Hydrolase date Jun 12, 2018
title Glucuronoyl Esterase From Opitutus Terrae (Au Derivative)
authors L.Lo Leggio, J.Larsbrink, R.Meland Knudsen, S.Mazurkewich, J.C.N Poulsen
compound source
Molecule: Putative Acetyl Xylan Esterase
Chain: A
Engineered: Yes
 Organism_scientific: Opitutus Terrae Pb90-1
Organism_taxid: 452637
Gene: Oter_0116
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
symmetry Space Group: P 1
R_factor 0.135 R_Free 0.159
crystal
cell
length a length b length c angle alpha angle beta angle gamma
43.693 44.608 50.558 76.57 67.17 70.65
method X-Ray Diffractionresolution 1.50 Å
ligand AU, CA, EDO, MG, MPD enzyme
Primary referenceBiochemical and structural features of diverse bacterial glucuronoyl esterases facilitating recalcitrant biomass conversion., Arnling Baath J, Mazurkewich S, Knudsen RM, Poulsen JN, Olsson L, Lo Leggio L, Larsbrink J, Biotechnol Biofuels. 2018 Aug 1;11:213. doi: 10.1186/s13068-018-1213-x., eCollection 2018. PMID:30083226
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (137 Kb) [Save to disk]
  • Biological Unit Coordinates (6grw.pdb1.gz) 132 Kb
  • LPC: Ligand-Protein Contacts for 6GRW
  • CSU: Contacts of Structural Units for 6GRW
  • Structure Factors (1677 Kb)
  • Retrieve 6GRW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6GRW from S2C, [Save to disk]
    • View 6GRW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6GRW
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6grw_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6GRW
  • Community annotation for 6GRW at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science