6GU2 Cell Cycle date Jun 19, 2018
title Cdk1cyclinbcks2 In Complex With Flavopiridol
authors D.J.Wood, S.Korolchuk, N.J.Tatum, L.Z.Wang, J.A.Endicott, M.E.M.N M.P.Martin
compound source
Molecule: Cyclin-Dependent Kinase 1
Chain: A
Synonym: Cdk1,Cell Division Control Protein 2 Homolog,Cell Protein Kinase 1,P34 Protein Kinase;
Ec: 2.7.11.22,2.7.11.23
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cdk1, Cdc2, Cdc28a, Cdkn1, P34cdc2
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_plasmid: Pvl1393

Molecule: G2mitotic-Specific Cyclin-B1
Chain: B
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ccnb1, Ccnb
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_plasmid: Pet28a

Molecule: Cyclin-Dependent Kinases Regulatory Subunit 2
Chain: C
Synonym: Cks-2
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cks2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: I 1 2 1
R_factor 0.189 R_Free 0.239
crystal
cell
length a length b length c angle alpha angle beta angle gamma
78.132 53.782 180.213 90.00 98.26 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand F9Z enzyme Transferase E.C.2.7.11.22 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A
  • virus receptor activity
  • histone kinase activity


  • C


    Primary referenceDifferences in the Conformational Energy Landscape of CDK1 and CDK2 Suggest a Mechanism for Achieving Selective CDK Inhibition., Wood DJ, Korolchuk S, Tatum NJ, Wang LZ, Endicott JA, Noble MEM, Martin MP, Cell Chem Biol. 2018 Nov 1. pii: S2451-9456(18)30375-1. doi:, 10.1016/j.chembiol.2018.10.015. PMID:30472117
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (114 Kb) [Save to disk]
  • Biological Unit Coordinates (6gu2.pdb1.gz) 109 Kb
  • LPC: Ligand-Protein Contacts for 6GU2
  • CSU: Contacts of Structural Units for 6GU2
  • Structure Factors (370 Kb)
  • Retrieve 6GU2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6GU2 from S2C, [Save to disk]
  • View 6GU2 in 3D
  • Proteopedia, because life has more than 2D.
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  • Visual 3D analysis of 6GU2
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6gu2_A] [6gu2_C] [6gu2_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6GU2
  • Community annotation for 6GU2 at PDBWiki (http://pdbwiki.org)

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