6GYZ Isomerase date Jul 02, 2018
title Crystal Structure Of Glmm From Staphylococcus Aureus
authors T.Tosi, P.S.Freemont, A.Grundling
compound source
Molecule: Phosphoglucosamine Mutase
Chain: A, B
Ec: 5.4.2.10
Engineered: Yes
 Organism_scientific: Staphylococcus Aureus
Organism_taxid: 1280
Gene: Glmm, Btn44_13160, Ep54_06960, Eq90_12990, Hmpref3211 Rk64_11470, Rk68_01815, Rk73_08340;
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.222 R_Free 0.273
crystal
cell
length a length b length c angle alpha angle beta angle gamma
88.653 93.884 156.308 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.00 Å
ligand
enzyme Isomerase E.C.5.4.2.10 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceInhibition of the Staphylococcus aureus c-di-AMP cyclase DacA by direct interaction with the phosphoglucosamine mutase GlmM., Tosi T, Hoshiga F, Millership C, Singh R, Eldrid C, Patin D, Mengin-Lecreulx D, Thalassinos K, Freemont P, Grundling A, PLoS Pathog. 2019 Jan 22;15(1):e1007537. doi: 10.1371/journal.ppat.1007537. PMID:30668586
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (300 Kb) [Save to disk]
  • Biological Unit Coordinates (6gyz.pdb1.gz) 292 Kb
  • CSU: Contacts of Structural Units for 6GYZ
  • Structure Factors (409 Kb)
  • Retrieve 6GYZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6GYZ from S2C, [Save to disk]
    • View 6GYZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6GYZ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6gyz_A] [6gyz_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6GYZ
  • Community annotation for 6GYZ at PDBWiki (http://pdbwiki.org)

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