6GZH Transferase date Jul 04, 2018
title Crystal Structure Of Human Cdk9cyclint1 With A86
authors Y.Ben-Neriah, A.Venkatachalam, W.Minzel, A.Fink, I.Snir-Alkalay,
compound source
Molecule: Cyclin-Dependent Kinase 9
Chain: A
Synonym: C-2k,Cell Division Cycle 2-Like Protein Kinase 4,C Division Protein Kinase 9,Serinethreonine-Protein Kinase P Tat-Associated Kinase Complex Catalytic Subunit;
Ec: 2.7.11.22,2.7.11.23
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cdk9, Cdc2l4, Tak
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108

Molecule: Cyclin-T1
Chain: B
Synonym: Cyclin-T
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ccnt1
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
symmetry Space Group: H 3
R_factor 0.171 R_Free 0.257
crystal
cell
length a length b length c angle alpha angle beta angle gamma
171.599 171.599 97.790 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.17 Å
ligand GOL, LCI, TPO enzyme Transferase E.C.2.7.11.22 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


B
  • cyclin-dependent protein ser...


  • Primary referenceSmall Molecules Co-targeting CKIalpha and the Transcriptional Kinases CDK7/9 Control AML in Preclinical Models., Minzel W, Venkatachalam A, Fink A, Hung E, Brachya G, Burstain I, Shaham M, Rivlin A, Omer I, Zinger A, Elias S, Winter E, Erdman PE, Sullivan RW, Fung L, Mercurio F, Li D, Vacca J, Kaushansky N, Shlush L, Oren M, Levine R, Pikarsky E, Snir-Alkalay I, Ben-Neriah Y, Cell. 2018 Aug 20. pii: S0092-8674(18)30973-5. doi: 10.1016/j.cell.2018.07.045. PMID:30146162
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (205 Kb) [Save to disk]
  • Biological Unit Coordinates (6gzh.pdb1.gz) 197 Kb
  • LPC: Ligand-Protein Contacts for 6GZH
  • CSU: Contacts of Structural Units for 6GZH
  • Structure Factors (619 Kb)
  • Retrieve 6GZH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6GZH from S2C, [Save to disk]
  • View 6GZH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6GZH
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6gzh_B] [6gzh_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6GZH
  • Community annotation for 6GZH at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science