6H7L Immune System date Jul 31, 2018
title Activated Turkey Beta1 Adrenoceptor With Bound Partial Agoni Dobutamine And Nanobody Nb6b9
authors T.Warne, P.C.Edwards, A.S.Dore, A.G.W.Leslie, C.G.Tate
compound source
Molecule: Thioredoxin 1
Chain: E, F
Synonym: Trx-1
Engineered: Yes
Mutation: Yes
Organism_scientific: Escherichia Coli (Strain K12)
Organism_taxid: 83333
Gene: Trxa, Fipa, Tsnc, B3781, Jw5856
Expression_system: Trichoplusia Ni
Expression_system_common: Cabbage Looper
Expression_system_taxid: 7111
Expression_system_vector_type: Baculovirus

Molecule: Beta-1 Adrenergic Receptor
Chain: A, B
Synonym: Beta-1 Adrenoreceptor,Beta-T
Engineered: Yes
Mutation: Yes

Organism_scientific: Meleagris Gallopavo
Organism_common: Turkey
Organism_taxid: 9103
Gene: Adrb1
Expression_system: Trichoplusia Ni
Expression_system_common: Cabbage Looper
Expression_system_taxid: 7111
Expression_system_vector_type: Baculovirus

Molecule: Camelid Antibody Fragment Nb6b9
Chain: C, D
Engineered: Yes

Organism_scientific: Lama Glama
Organism_common: Llama
Organism_taxid: 9844
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_plasmid: Pet-26b(+)
symmetry Space Group: P 21 21 21
R_factor 0.241 R_Free 0.278
crystal
cell
length a length b length c angle alpha angle beta angle gamma
116.513 119.699 129.156 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand 2CV, NA, Y00 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


F, E
  • DNA polymerase processivity ...


  • Primary referenceMolecular basis for high-affinity agonist binding in GPCRs., Warne T, Edwards PC, Dore AS, Leslie AGW, Tate CG, Science. 2019 May 9. pii: science.aau5595. doi: 10.1126/science.aau5595. PMID:31072904
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (177 Kb) [Save to disk]
  • Biological Unit Coordinates (6h7l.pdb1.gz) 87 Kb
  • Biological Unit Coordinates (6h7l.pdb2.gz) 85 Kb
  • LPC: Ligand-Protein Contacts for 6H7L
  • CSU: Contacts of Structural Units for 6H7L
  • Structure Factors (1744 Kb)
  • Retrieve 6H7L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6H7L from S2C, [Save to disk]
  • View 6H7L in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6H7L
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6h7l from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6h7l_F] [6h7l_B] [6h7l_C] [6h7l_D] [6h7l_A] [6h7l_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6H7L
  • Community annotation for 6H7L at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science