6HBW Oxygen Storage Transport date Sep 10, 1998
title Crystal Structure Of Deoxy-Human Hemoglobin Beta6 Glu->Trp
authors D.J.Harrington, K.Adachi, W.E.Royer Jr.
compound source
Molecule: Protein (Hemoglobin Alpha 1)
Chain: A, C
Synonym: Hemoglobin A
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Tissue: Blood
Cell: Red Blood Cells
Cellular_location: Cytoplasm
Expression_system: Saccharomyces Cerevisiae
Expression_system_common: Baker'S Yeast
Expression_system_taxid: 4932
Expression_system_strain: Gsy112
Expression_system_plasmid: Pgs389

Molecule: Protein (Hemoglobin Beta)
Chain: B, D
Synonym: Hemoglobin B
Engineered: Yes
Mutation: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Tissue: Blood
Cell: Red Blood Cells
Cellular_location: Cytoplasm
Expression_system: Saccharomyces Cerevisiae
Expression_system_common: Baker'S Yeast
Expression_system_taxid: 4932
Expression_system_strain: Gsy112
Expression_system_plasmid: Pgs389
symmetry Space Group: P 21 21 21
R_factor 0.198 R_Free 0.264
crystal
cell
length a length b length c angle alpha angle beta angle gamma
62.950 81.280 111.350 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand HEM enzyme
related structures by homologous chain: 1A4F, 1O1K
Gene
Ontology
ChainFunctionProcessComponent
A, C
  • peroxidase activity


  • D, B
  • peroxidase activity


  • Primary referenceCrystal structure of deoxy-human hemoglobin beta6 Glu --> Trp. Implications for the structure and formation of the sickle cell fiber., Harrington DJ, Adachi K, Royer WE Jr, J Biol Chem 1998 Dec 4;273(49):32690-6. PMID:9830011
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (103 Kb) [Save to disk]
  • Biological Unit Coordinates (6hbw.pdb1.gz) 98 Kb
  • LPC: Ligand-Protein Contacts for 6HBW
  • CSU: Contacts of Structural Units for 6HBW
  • Likely Quarternary Molecular Structure file(s) for 6HBW
  • Structure Factors (292 Kb)
  • Retrieve 6HBW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6HBW from S2C, [Save to disk]
  • Re-refined 6hbw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 6HBW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6HBW
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 6HBW, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d6hbwa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d6hbwb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d6hbwc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d6hbwd_, region D [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6hbw_A] [6hbw_B] [6hbw] [6hbw_C] [6hbw_D]
  • SWISS-PROT database: [P69905] [P68871]
  • Belongs to the pore-forming globin (globin) family according to TCDB.
  • Belongs to the pore-forming globin (globin) family according to TCDB.
  • Domain organization of [HBA_HUMAN] [HBB_HUMAN] by SWISSPFAM
  • Other resources with information on 6HBW
  • Community annotation for 6HBW at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 6HBW from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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