6HGA Immune System date Aug 23, 2018
title Crystal Structure Of The Human Il-17rc D2-D3-D4 Domains In C With An Anti-App Tag Fab
authors J.M.Rondeau, A.Goepfert
compound source
Molecule: Interleukin-17 Receptor C
Chain: B
Fragment: Il-17rc D2-D3-D4 Domains
Synonym: Il-17rc,Interleukin-17 Receptor Homolog,Il17rhom, Interleukin-17 Receptor-Like Protein,Il-17rl,Zcytor14;
Engineered: Yes
Mutation: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Il17rc, Unq6118pro20040pro38901
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
Expression_system_variant: Gnti-
Expression_system_cell_line: Hek-293s
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pci-Derived

Molecule: Anti-App-Tag Fab Heavy-Chain
Chain: H
Synonym: 6e10a5 Fab
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Expression_system: Mus Musculus
Expression_system_taxid: 10090
Expression_system_cell_line: Hybridoma

Molecule: Anti-App-Tag Fab Light-Chain
Chain: L
Fragment: Anti-App-Tag Fab Heavy-Chain
Synonym: 6e10a5 Fab
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Expression_system: Mus Musculus
Expression_system_taxid: 10090
Expression_system_cell_line: Hybridoma
symmetry Space Group: P 62 2 2
R_factor 0.205 R_Free 0.232
crystal
cell
length a length b length c angle alpha angle beta angle gamma
250.910 250.910 78.610 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.60 Å
ligand NAG, PCA enzyme
Gene
Ontology
ChainFunctionProcessComponent
B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (239 Kb) [Save to disk]
  • Biological Unit Coordinates (6hga.pdb1.gz) 233 Kb
  • LPC: Ligand-Protein Contacts for 6HGA
  • CSU: Contacts of Structural Units for 6HGA
  • Structure Factors (414 Kb)
  • Retrieve 6HGA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6HGA from S2C, [Save to disk]
    • View 6HGA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6HGA
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6hga_H] [6hga_B] [6hga_L]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6HGA
  • Community annotation for 6HGA at PDBWiki (http://pdbwiki.org)

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