6HGO Immune System date Aug 23, 2018
title Crystal Structure Of Human Il-17f
authors J.M.Rondeau, A.Goepfert
compound source
Molecule: Interleukin-17f
Chain: A, B, C, D
Fragment: Il-17f
Synonym: Il-17f,Cytokine Ml-1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Il17f
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293s
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pci-Derived
symmetry Space Group: P 65
R_factor 0.199 R_Free 0.220
crystal
cell
length a length b length c angle alpha angle beta angle gamma
126.195 126.195 88.539 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.10 Å
ligand NAG, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStructural Analysis Reveals that the Cytokine IL-17F Forms a Homodimeric Complex with Receptor IL-17RC to Drive IL-17RA-Independent Signaling., Goepfert A, Lehmann S, Blank J, Kolbinger F, Rondeau JM, Immunity. 2020 Mar 17;52(3):499-512.e5. doi: 10.1016/j.immuni.2020.02.004. PMID:32187518
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (176 Kb) [Save to disk]
  • Biological Unit Coordinates (6hgo.pdb1.gz) 86 Kb
  • Biological Unit Coordinates (6hgo.pdb2.gz) 85 Kb
  • LPC: Ligand-Protein Contacts for 6HGO
  • CSU: Contacts of Structural Units for 6HGO
  • Structure Factors (422 Kb)
  • Retrieve 6HGO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6HGO from S2C, [Save to disk]
  • View 6HGO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6HGO
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6hgo_A] [6hgo_C] [6hgo_B] [6hgo_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6HGO
  • Community annotation for 6HGO at PDBWiki (http://pdbwiki.org)

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