6HOL	Signaling Protein	date	Sep 17, 2018
title	Structure Of Atg14 Lir Motif Bound To Gabarapl1
authors	S.Mouilleron, A.B.Birgisdottir, Z.Bhujbal, M.Wirth, E.Sjottem, G. W.Zhang, R.Lee, N.O'Reilly, S.Tooze, T.Lamark, T.Johansen
compound		source
Molecule: Gamma-Aminobutyric Acid Receptor-Associated Prote Chain: A, B Synonym: Early Estrogen-Regulated Protein,Gaba(A) Receptor- Protein-Like 1,Glandular Epithelial Cell Protein 1,Gec-1; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Gabarapl1, Gec1 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Beclin 1-Associated Autophagy-Related Key Regulat Chain: C, D Synonym: Barkor,Autophagy-Related Protein 14-Like Protein,A Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
symmetry	Space Group: P 1	R_factor 0.164 R_Free 0.203
crystal cell	length a length b length c angle alpha angle beta angle gamma 34.460 41.620 46.240 86.08 76.27 86.70
method	X-Ray Diffraction	resolution	1.40 Å
ligand	GOL, SO4	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	Members of the autophagy class III phosphatidylinositol 3-kinase complex I interact with GABARAP and GABARAPL1 via LIR motifs., Birgisdottir AB, Mouilleron S, Bhujabal Z, Wirth M, Sjottem E, Evjen G, Zhang W, Lee R, O'Reilly N, Tooze SA, Lamark T, Johansen T, Autophagy. 2019 Feb 15. doi: 10.1080/15548627.2019.1581009. PMID:30767700

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (101 Kb) [Save to disk] Biological Unit Coordinates (6hol.pdb1.gz) 49 Kb Biological Unit Coordinates (6hol.pdb2.gz) 48 Kb LPC: Ligand-Protein Contacts for 6HOL CSU: Contacts of Structural Units for 6HOL Structure Factors (948 Kb) Retrieve 6HOL in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6HOL from S2C, [Save to disk]

View 6HOL in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 6HOL

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6hol_C] [6hol_B] [6hol_D] [6hol_A] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 6HOL

Community annotation for 6HOL at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---