6HP9 Transferase date Sep 19, 2018
title Structure Of The Kinase Domain Of Human Ddr1 In Complex With Amino-2,3-Dihydro-1h-Indene-5-Carboxamide-Based Inhibitor
authors D.M.Pinkas, A.E.Fox, K.Kupinska, N.A.Burgess-Brown, F.Von Delft, C.H.Arrowsmith, A.M.Edwards, C.Bountra, A.N.Bullock, Structural Consortium (Sgc)
compound source
Molecule: Epithelial Discoidin Domain-Containing Receptor 1
Chain: A, B
Synonym: Epithelial Discoidin Domain Receptor 1,Cd167 Antig Family Member A,Cell Adhesion Kinase,Discoidin Receptor Tyr Kinase,Hgk2,Mammary Carcinoma Kinase 10,Mck-10,Protein-Tyro Kinase 3a,Protein-Tyrosine Kinase Rtk-6,Trk E,Tyrosine Kina Tyrosine-Protein Kinase Cak;
Ec: 2.7.10.1
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ddr1, Cak, Eddr1, Nep, Ntrk4, Ptk3a, Rtk6, Trke
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
symmetry Space Group: P 21 21 21
R_factor 0.205 R_Free 0.251
crystal
cell
length a length b length c angle alpha angle beta angle gamma
62.510 65.890 162.880 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.96 Å
ligand GKB enzyme Transferase E.C.2.7.10.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (108 Kb) [Save to disk]
  • Biological Unit Coordinates (6hp9.pdb1.gz) 53 Kb
  • Biological Unit Coordinates (6hp9.pdb2.gz) 52 Kb
  • LPC: Ligand-Protein Contacts for 6HP9
  • CSU: Contacts of Structural Units for 6HP9
  • Structure Factors (1895 Kb)
  • Retrieve 6HP9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6HP9 from S2C, [Save to disk]
    • View 6HP9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6HP9
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6hp9_B] [6hp9_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6HP9
  • Community annotation for 6HP9 at PDBWiki (http://pdbwiki.org)

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