6I06 Transferase date Oct 25, 2018
title Crystal Structure Of Psychrophilic Phosphoglycerate Kinase F Pseudomonas Tacii18
authors D.Mandelman, R.Haser, N.Aghajari
compound source
Molecule: Phosphoglycerate Kinase
Chain: A
Ec: 2.7.2.3
Engineered: Yes
Other_details: There Is A Mismatch Between The Sequence Dep
Uniprot (Id: Q9rbs3) And The Structure At Position 150. Thi Clearly Be A Ser As Judged From The Electron Density And No Listed In The Sequence. Idem For Residue 219 Which Is Not A An Asp, And Residue 358 Which Is Not A Tyr But A Gln. Follo Residues Have Been Refined As Alanines Due To Missing Elect
Density For The Side-Chains: Q12, K102, K116 And The K248 H Refined As A Ser And Ser266 As A Gly Due To Missing Electro
 Organism_scientific: Pseudomonas
Organism_taxid: 286
Gene: Pgk
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 32
R_factor 0.179 R_Free 0.229
crystal
cell
length a length b length c angle alpha angle beta angle gamma
59.100 59.100 87.000 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.00 Å
ligand
enzyme Transferase E.C.2.7.2.3 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural determinants increasing flexibility confer cold adaptation in psychrophilic phosphoglycerate kinase., Mandelman D, Ballut L, Wolff DA, Feller G, Gerday C, Haser R, Aghajari N, Extremophiles. 2019 May 30. pii: 10.1007/s00792-019-01102-x. doi:, 10.1007/s00792-019-01102-x. PMID:31147836
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (125 Kb) [Save to disk]
  • Biological Unit Coordinates (6i06.pdb1.gz) 121 Kb
  • CSU: Contacts of Structural Units for 6I06
  • Structure Factors (178 Kb)
  • Retrieve 6I06 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6I06 from S2C, [Save to disk]
    • View 6I06 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
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    • Visual 3D analysis of 6I06
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6i06_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6I06
  • Community annotation for 6I06 at PDBWiki (http://pdbwiki.org)

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