6I3F Hydrolase date Nov 06, 2018
title Crystal Structure Of The Complex Of Human Angiotensinogen An 2.55 Angstrom
authors Y.Yan, R.J.Read
compound source
Molecule: Angiotensinogen
Chain: A
Synonym: Serpin A8
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Agt, Serpina8
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell: Hek293ebna
Expression_system_plasmid: Pcep4

Molecule: Renin
Chain: B
Synonym: Angiotensinogenase
Ec: 3.4.23.15
Engineered: Yes
Mutation: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ren
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell: Hek293ebna
Expression_system_plasmid: Pcep4
symmetry Space Group: P 63 2 2
R_factor 0.206 R_Free 0.234
crystal
cell
length a length b length c angle alpha angle beta angle gamma
124.119 124.119 260.911 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.55 Å
ligand BMA, FUC, GOL, MAN, NAG, SO4 enzyme Hydrolase E.C.3.4.23.15 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A
  • type 1 angiotensin receptor ...
  • positive regulation of chole...

  • B


    Primary referenceStructural basis for the specificity of renin-mediated angiotensinogen cleavage., Yan Y, Zhou A, Carrell RW, Read RJ, J Biol Chem. 2018 Dec 18. pii: RA118.006608. doi: 10.1074/jbc.RA118.006608. PMID:30563843
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (129 Kb) [Save to disk]
  • Biological Unit Coordinates (6i3f.pdb1.gz) 123 Kb
  • LPC: Ligand-Protein Contacts for 6I3F
  • CSU: Contacts of Structural Units for 6I3F
  • Structure Factors (1651 Kb)
  • Retrieve 6I3F in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6I3F from S2C, [Save to disk]
  • View 6I3F in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6I3F
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6i3f_A] [6i3f_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6I3F
  • Community annotation for 6I3F at PDBWiki (http://pdbwiki.org)

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