6I68 Ligase date Nov 15, 2018
title Co-Crystal Structure Of Human Spop Math Domain (M117v) And H Fragment
authors M.S.Ostertag, G.M.Popowicz, M.Sattler
compound source
Molecule: Speckle-Type Poz Protein
Chain: A, C, E, G
Synonym: Hib Homolog 1,Roadkill Homolog 1
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Spop
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008

Molecule: Bromodomain-Containing Protein 3
Chain: B, D, F, H
Synonym: Ring3-Like Protein
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Brd3, Kiaa0043, Ring3l
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
symmetry Space Group: P 1 21 1
R_factor 0.196 R_Free 0.238
crystal
cell
length a length b length c angle alpha angle beta angle gamma
44.775 90.128 88.563 90.00 91.17 90.00
method X-Ray Diffractionresolution 1.85 Å
Primary referenceStructural Insights into BET Client Recognition of Endometrial and Prostate Cancer-Associated SPOP Mutants., Ostertag MS, Hutwelker W, Plettenburg O, Sattler M, Popowicz GM, J Mol Biol. 2019 Apr 23. pii: S0022-2836(19)30213-X. doi:, 10.1016/j.jmb.2019.04.017. PMID:31026449
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (209 Kb) [Save to disk]
  • Biological Unit Coordinates (6i68.pdb1.gz) 54 Kb
  • Biological Unit Coordinates (6i68.pdb2.gz) 53 Kb
  • Biological Unit Coordinates (6i68.pdb3.gz) 52 Kb
  • Biological Unit Coordinates (6i68.pdb4.gz) 51 Kb
  • CSU: Contacts of Structural Units for 6I68
  • Structure Factors (1350 Kb)
  • Retrieve 6I68 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6I68 from S2C, [Save to disk]
  • View 6I68 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6I68
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6i68_D] [6i68_A] [6i68_G] [6i68_E] [6i68_H] [6i68_F] [6i68_B] [6i68_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6I68
  • Community annotation for 6I68 at PDBWiki (http://pdbwiki.org)

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