6IBE Cell Adhesion date Nov 29, 2018
title The Ferm Domain Of Human Epb41l3
authors W.J.Bradshaw, V.L.Katis, J.A.Newman, A.Fernandez-Cid, N.Burgess- F.Von Delft, C.H.Arrowsmith, A.Edwards, C.Bountra, O.Gileadi
compound source
Molecule: Band 4.1-Like Protein 3
Chain: A
Synonym: 4.1b,Differentially Expressed In Adenocarcinoma Of Protein 1,Dal-1;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Epb41l3, Dal1, Kiaa0987
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_plasmid: Pnic28-Bsa4
symmetry Space Group: P 21 21 21
R_factor 0.154 R_Free 0.200
crystal
cell
length a length b length c angle alpha angle beta angle gamma
38.915 78.687 98.981 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.45 Å
ligand EDO, MES enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (115 Kb) [Save to disk]
  • Biological Unit Coordinates (6ibe.pdb1.gz) 110 Kb
  • LPC: Ligand-Protein Contacts for 6IBE
  • CSU: Contacts of Structural Units for 6IBE
  • Structure Factors (2249 Kb)
  • Retrieve 6IBE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6IBE from S2C, [Save to disk]
    • View 6IBE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6IBE
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6ibe_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6IBE
  • Community annotation for 6IBE at PDBWiki (http://pdbwiki.org)

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