6ID0
date
authors
compound
source
symmetry
R_factor
R_Free
crystal
cell
length a
length b
length c
angle alpha
angle beta
angle gamma
method
X-Ray Diffraction
resolution
ligand
GTP
,
IHP
,
MG
,
SEP
,
ZN
enzyme
Gene
Ontology
Chain
Function
Process
Component
A
metallopeptidase activity
isopeptidase activity
catalytic step 2 spliceosome...
C
E
catalytic step 2 spliceosome...
I
transcription, DNA-templated...
catalytic step 2 spliceosome...
J
catalytic step 2 spliceosome...
K
L
catalytic step 2 spliceosome...
M
catalytic step 2 spliceosome...
N
ligand-dependent nuclear rec...
O
catalytic step 2 spliceosome...
P
catalytic step 2 spliceosome...
Q
catalytic step 2 spliceosome...
R
catalytic step 2 spliceosome...
S
catalytic step 2 spliceosome...
T
catalytic step 2 spliceosome...
U
W
catalytic step 2 spliceosome...
a, h
catalytic step 2 spliceosome...
b, i
catalytic step 2 spliceosome...
c, j
catalytic step 2 spliceosome...
d, k
catalytic step 2 spliceosome...
e, l
catalytic step 2 spliceosome...
m, f
catalytic step 2 spliceosome...
n, g
catalytic step 2 spliceosome...
o
spliceosomal complex
catalytic step 2 spliceosome...
p
spliceosomal complex
U2 snRNP
catalytic step 2 spliceosome...
r, t, s, q
catalytic step 2 spliceosome...
y
catalytic step 2 spliceosome...
Primary reference
Structures of the human spliceosomes before and after release of the ligated exon., Zhang X, Zhan X, Yan C, Zhang W, Liu D, Lei J, Shi Y, Cell Res. 2019 Feb 6. pii: 10.1038/s41422-019-0143-x. doi:, 10.1038/s41422-019-0143-x. PMID:
30728453
Data retrieval
Asymmetric unit, PDB entry:
[header only]
[complete with coordinates]
(1498 Kb)
[Save to disk]
Biological Unit Coordinates
(6id0.pdb1.gz) 1442 Kb
LPC:
Ligand-Protein Contacts
for 6ID0
CSU:
Contacts of Structural Units
for 6ID0
Retrieve 6ID0 in
mmCIF
format
[Save to disk]
SEQRES to COORDINATES
correlation for
6ID0
from
S2C
,
[Save to disk]
View 6ID0 in 3D
Proteopedia
, because life has more than 2D.
On
Jmol
, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
On
FirstGlance
, an excellent tool for a guided tour on the structure components, by
E. Martz
.
Structure-derived information
Dipole
moment, from
Dipole Server
at Weizmann Institute
Sequence-derived information
View one-letter amino acid or nucleotide sequence for each chain:
[6id0_A]
[6id0_B]
[6id0_C]
[6id0_E]
[6id0_F]
[6id0_G]
[6id0_H]
[6id0_I]
[6id0_J]
[6id0_K]
[6id0_L]
[6id0_M]
[6id0_N]
[6id0_O]
[6id0_P]
[6id0_Q]
[6id0_R]
[6id0_S]
[6id0_T]
[6id0_U]
[6id0_W]
[6id0_a]
[6id0_b]
[6id0_c]
[6id0_d]
[6id0_e]
[6id0_f]
[6id0_g]
[6id0_h]
[6id0_i]
[6id0_j]
[6id0_k]
[6id0_l]
[6id0_m]
[6id0_n]
[6id0_o]
[6id0_p]
[6id0_q]
[6id0_r]
[6id0_s]
[6id0_t]
[6id0_y]
SWISS-PROT
database:
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