6ITV Oncoprotein date Nov 26, 2018
title Crystal Structure Of Activated C-Kit In Complex With Compoun
authors T.S.Wu, S.Y.Wu
compound source
Molecule: Maststem Cell Growth Factor Receptor Kit
Chain: A
Synonym: Scfr,Piebald Trait Protein,Pbt,Proto-Oncogene C-Ki Tyrosine-Protein Kinase Kit,P145 C-Kit,V-Kit Hardy-Zuckerma Sarcoma Viral Oncogene Homolog;
Ec: 2.7.10.1
Engineered: Yes
Other_details: Kinase Domain, Residue 547-693 And 754-935 F P10721, Linked With Ts
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Kit, Scfr
Expression_system: Unidentified Baculovirus
Expression_system_taxid: 10469
symmetry Space Group: P 43 21 2
R_factor 0.180 R_Free 0.231
crystal
cell
length a length b length c angle alpha angle beta angle gamma
59.853 59.853 197.984 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.88 Å
ligand AWO, PTR enzyme Transferase E.C.2.7.10.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (112 Kb) [Save to disk]
  • Biological Unit Coordinates (6itv.pdb1.gz) 210 Kb
  • LPC: Ligand-Protein Contacts for 6ITV
  • CSU: Contacts of Structural Units for 6ITV
  • Structure Factors (236 Kb)
  • Retrieve 6ITV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6ITV from S2C, [Save to disk]
    • View 6ITV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6ITV
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6itv_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6ITV
  • Community annotation for 6ITV at PDBWiki (http://pdbwiki.org)

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