6IYB	Transport Protein	date	Dec 14, 2018
title	Structure Of Human Orp1 Ank - Rab7 Complex
authors	J.Tong, Y.J.Im
compound		source
Molecule: Ras-Related Protein Rab-7a Chain: A, C Fragment: Unp Residues 2-195 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Rab7a Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3)
Molecule: Oxysterol-Binding Protein-Related Protein 1 Chain: B, D Fragment: Unp Residues 5-152 Synonym: Osbp-Related Protein 1 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Osbpl1a Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Phis2-Thr
symmetry	Space Group: P 21 21 21	R_factor 0.195 R_Free 0.232
crystal cell	length a length b length c angle alpha angle beta angle gamma 55.136 117.222 130.476 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.09 Å
ligand	GTP, MG	enzyme
Gene Ontology	Chain Function Process Component A, C
Primary reference	Structural basis of human ORP1-Rab7 interaction for the late-endosome and lysosome targeting., Tong J, Tan L, Chun C, Im YJ, PLoS One. 2019 Feb 5;14(2):e0211724. doi: 10.1371/journal.pone.0211724., eCollection 2019. PMID:30721249

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (110 Kb) [Save to disk] Biological Unit Coordinates (6iyb.pdb1.gz) 54 Kb Biological Unit Coordinates (6iyb.pdb2.gz) 53 Kb LPC: Ligand-Protein Contacts for 6IYB CSU: Contacts of Structural Units for 6IYB Structure Factors (479 Kb) Retrieve 6IYB in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6IYB from S2C, [Save to disk]

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Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

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Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6iyb_C] [6iyb_B] [6iyb_D] [6iyb_A] SWISS-PROT database: Domain organization of by SWISSPFAM

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