6JKO Oxidoreductase date Mar 01, 2019
title Crystal Structure Of Sulfoacetaldehyde Reductase From Bifido Kashiwanohense
authors Y.Zhou, T.Xu, L.Lin, Y.Zhang, Z.Yuchi
compound source
Molecule: Methanol Dehydrogenase
Chain: A, B, C, D
Engineered: Yes
Organism_scientific: Bifidobacterium Kashiwanohense Pv20-2
Organism_taxid: 1447716
Gene: Ah68_00250
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.157 R_Free 0.193
crystal
cell
length a length b length c angle alpha angle beta angle gamma
70.468 112.502 93.406 90.00 107.33 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceIdentification and characterization of a new sulfoacetaldehyde reductase from the human gut bacterium Bifidobacterium kashiwanohense., Zhou Y, Wei Y, Nanjaraj Urs AN, Lin L, Xu T, Hu Y, Ang EL, Zhao H, Yuchi Z, Zhang Y, Biosci Rep. 2019 May 23. pii: BSR20190715. doi: 10.1042/BSR20190715. PMID:31123167
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (248 Kb) [Save to disk]
  • Biological Unit Coordinates (6jko.pdb1.gz) 124 Kb
  • Biological Unit Coordinates (6jko.pdb2.gz) 122 Kb
  • LPC: Ligand-Protein Contacts for 6JKO
  • CSU: Contacts of Structural Units for 6JKO
  • Structure Factors (588 Kb)
  • Retrieve 6JKO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6JKO from S2C, [Save to disk]
  • View 6JKO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6JKO
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6jko_D] [6jko_B] [6jko_C] [6jko_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6JKO
  • Community annotation for 6JKO at PDBWiki (http://pdbwiki.org)

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