6JR1	Gene Regulation Dna	date	Apr 02, 2019
title	Crystal Structure Of The Human Nucleosome Phased With 16 Sel Atoms
authors	M.Saotome, N.Horikoshi, K.Urano, T.Kujirai, H.Yuzurihara, H.Kurum W.Kagawa
compound		source
Molecule: Histone H3.1 Chain: A, E Synonym: Histone H3a,Histone H3b,Histone H3c,Histone H3 H3f,Histone H3h,Histone H3i,Histone H3j,Histone H3k,Hi H3l; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Hist1h3a, H3fa, Hist1h3b, H3fl, Hist1h3c, H3fc, Hist1 H3fb, Hist1h3e, H3fd, Hist1h3f, H3fi, Hist1h3g, H3fh, Hist1 H3fk, Hist1h3i, H3ff, Hist1h3j, H3fj; Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: B834(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet15b
Molecule: Histone H4 Chain: B, F Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Hist1h4a, H4a, H4fa, Hist1h4b, H4i, H4fi, Hist1h4c, H4fg, Hist1h4d, H4b, H4fb, Hist1h4e, H4j, H4fj, Hist1h4f, H4fc, Hist1h4h, H4h, H4fh, Hist1h4i, H4m, H4fm, Hist1h4j, H4fe, Hist1h4k, H4d, H4fd, Hist1h4l, H4k, H4fk, Hist2h4a, H4f2, H4fn, Hist2h4, Hist2h4b, H4o, H4fo, Hist4h4; Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Jm109(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet15b
Molecule: Histone H2a Type 1-Be Chain: C, G Synonym: Histone H2a.2,Histone H2aa,Histone H2am Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Hist1h2ab, H2afm, Hist1h2ae, H2afa Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: B834(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet15b
Molecule: Histone H2b Type 1-J Chain: D, H Synonym: Histone H2b.1,Histone H2b.R,H2br Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Hist1h2bj, H2bfr Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: B834(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Phce
Molecule: Dna (146-Mer) Chain: I, J Engineered: Yes		Organism_scientific: Homo Sapiens Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 21 21 21	R_factor 0.209 R_Free 0.243
crystal cell	length a length b length c angle alpha angle beta angle gamma 99.461 108.539 170.462 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.40 Å
ligand	CL, MN, MSE	enzyme
Gene Ontology	Chain Function Process Component A, E C, G F, B H, D

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (263 Kb) [Save to disk] Biological Unit Coordinates (6jr1.pdb1.gz) 253 Kb LPC: Ligand-Protein Contacts for 6JR1 CSU: Contacts of Structural Units for 6JR1 Structure Factors (2269 Kb) Retrieve 6JR1 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6JR1 from S2C, [Save to disk]

View 6JR1 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 6JR1

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6jr1_A] [6jr1_I] [6jr1_G] [6jr1_H] [6jr1_D] [6jr1_C] [6jr1_E] [6jr1_B] [6jr1_F] [6jr1_J] SWISS-PROT database: Domain organization of by SWISSPFAM

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