6JZ8 Hydrolase date Apr 30, 2019
title B-Glucuronidase From Ruminococcus Gnavus In Complex With D-G 5-Lactone
authors P.Dashnyam, H.Y.Lin
compound source
Molecule: Beta-Glucuronidase
Chain: A, B
Engineered: Yes
Organism_scientific: [Ruminococcus] Gnavus
Organism_taxid: 33038
Gene: Uida
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.163 R_Free 0.174
crystal
cell
length a length b length c angle alpha angle beta angle gamma
162.560 103.345 112.281 90.00 130.99 90.00
method X-Ray Diffractionresolution 1.58 Å
ligand GCB enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (217 Kb) [Save to disk]
  • Biological Unit Coordinates (6jz8.pdb1.gz) 208 Kb
  • LPC: Ligand-Protein Contacts for 6JZ8
  • CSU: Contacts of Structural Units for 6JZ8
  • Structure Factors (3818 Kb)
  • Retrieve 6JZ8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6JZ8 from S2C, [Save to disk]
  • View 6JZ8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6JZ8
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6jz8_B] [6jz8_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6JZ8
  • Community annotation for 6JZ8 at PDBWiki (http://pdbwiki.org)

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