6KJV Signaling Protein date Jul 23, 2019
title Structure Of Thermal-Stabilised(M9) Human Glp-1 Receptor Tra Domain
authors G.Song
compound source
Molecule: Glucagon-Like Peptide 1 Receptor,Endolysin,Glucag Peptide 1 Receptor;
Chain: A, B
Synonym: Glp-1r,Lysis Protein,Lysozyme,Muramidase,Glp-1r
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens, Enterobacteria Phage T4
Organism_common: Human
Organism_taxid: 9606, 10665
Gene: Glp1r
Expression_system: Spodoptera Aff. Frugiperda 1 Bold-2017
Expression_system_taxid: 2449148
Expression_system_cell_line: Iplb-Sf-21-Ae
Expression_system_cell: Sf9
Expression_system_plasmid: Pfasctbac
symmetry Space Group: P 1
R_factor 0.247 R_Free 0.280
crystal
cell
length a length b length c angle alpha angle beta angle gamma
65.030 68.300 83.430 91.53 90.34 106.49
method X-Ray Diffractionresolution 2.80 Å
ligand 97Y, OLC enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (290 Kb) [Save to disk]
  • Biological Unit Coordinates (6kjv.pdb1.gz) 142 Kb
  • Biological Unit Coordinates (6kjv.pdb2.gz) 143 Kb
  • LPC: Ligand-Protein Contacts for 6KJV
  • CSU: Contacts of Structural Units for 6KJV
  • Structure Factors (697 Kb)
  • Retrieve 6KJV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6KJV from S2C, [Save to disk]
  • View 6KJV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6KJV
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6kjv from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6kjv_B] [6kjv_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6KJV
  • Community annotation for 6KJV at PDBWiki (http://pdbwiki.org)

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