6KLR Lipid Binding Protein date Jul 30, 2019
title Crystal Structure Of Human Wipi3 In Complex With The Wir-Pep Atg2a
authors J.Q.Ren, R.B.Liang, W.Feng
compound source
Molecule: Chimera Atg2a And Wipi3
Chain: A, B
Synonym: Wipi-3,Wd Repeat-Containing Protein 45-Like,Wdr45- Protein,Wd Repeat-Containing Protein 45b,Wipi49-Like Protei
Engineered: Yes
Mutation: Yes
Other_details: The Sequence Provided Here Is Chimeric. We F (1374-1404) To The N-Terminal Of Wipi3. And We Also Deleted
In Wipi3 (Loop1: 75-80; Loop2: 264-281). The First Four Res (Gpgs) Is The Expression Tag. Residues Form 5 To 35 (Prdgepvvtqlhpgpivvrdgyfsrpigstd) Is The Fused Atg2a Sequen 1374 To 1404). Residues From 36 To 37 (Gs) Is The Linker. T Part Is Form Wipi3.
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Atg2a, Kiaa0404, Wdr45b, Wdr45l, Wipi3
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_plasmid: Pet32a
symmetry Space Group: P 21 21 2
R_factor 0.213 R_Free 0.255
crystal
cell
length a length b length c angle alpha angle beta angle gamma
75.124 121.063 37.768 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.21 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceMulti-site-mediated entwining of the linear WIR-motif around WIPI beta-propellers for autophagy., Ren J, Liang R, Wang W, Zhang D, Yu L, Feng W, Nat Commun. 2020 Jun 1;11(1):2702. doi: 10.1038/s41467-020-16523-y. PMID:32483132
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (115 Kb) [Save to disk]
  • Biological Unit Coordinates (6klr.pdb1.gz) 108 Kb
  • CSU: Contacts of Structural Units for 6KLR
  • Structure Factors (464 Kb)
  • Retrieve 6KLR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6KLR from S2C, [Save to disk]
  • View 6KLR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6KLR
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6klr_B] [6klr_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6KLR
  • Community annotation for 6KLR at PDBWiki (http://pdbwiki.org)

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