6KNC	Replication Dna	date	Aug 05, 2019
title	Pold-Pcna-Dna (Form B)
authors	K.Mayanagi, K.Oki, N.Miyazaki, S.Ishino, T.Yamagami, K.Iwasaki, D. K.Morikawa, T.Shirai, Y.Ishino
compound		source
Molecule: Dna Polymerase II Small Subunit Chain: A Synonym: Dna Polymerase D Dp1 (Dna Polymerase II Small) Sub II,Exodeoxyribonuclease Small Subunit; Ec: 2.7.7.7,3.1.11.1 Engineered: Yes		Organism_scientific: Thermococcus Kodakarensis Kod1 Organism_taxid: 69014 Strain: Atcc Baa-918 Jcm 12380 Kod1 Gene: Polb, Tk1902 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Dna Polymerase D Dp2 (Dna Polymerase II Large) Su Chain: B Engineered: Yes		Organism_scientific: Thermococcus Kodakarensis Organism_taxid: 311400 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Dna Polymerase Sliding Clamp 1 Chain: C, D, E Synonym: Proliferating Cell Nuclear Antigen Homolog 1,Pcna Engineered: Yes		Organism_scientific: Thermococcus Kodakarensis Kod1 Organism_taxid: 69014 Strain: Atcc Baa-918 Jcm 12380 Kod1 Gene: Pcn1, Tk0535 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Pri30dna Chain: F Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
Molecule: Temp45dna Chain: G Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
symmetry	Space Group: P 1	R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma 1.000 1.000 1.000 90.00 90.00 90.00
method	Electron Microscopy	resolution	9.30 Å
ligand	FE, ZN	enzyme	Transferase E.C.2.7.7.7 BRENDA
Gene Ontology	Chain Function Process Component D, C, E

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (357 Kb) [Save to disk] Biological Unit Coordinates (6knc.pdb1.gz) 352 Kb LPC: Ligand-Protein Contacts for 6KNC CSU: Contacts of Structural Units for 6KNC Retrieve 6KNC in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6KNC from S2C, [Save to disk]

View 6KNC in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 6KNC

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6knc_D] [6knc_E] [6knc_A] [6knc_G] [6knc_F] [6knc_C] [6knc_B] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 6KNC

Community annotation for 6KNC at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---