6KS1 Membrane Protein Immune System date Aug 10, 2018
title Crystal Structure Of The Human Adiponectin Receptor 2
authors H.Tanabe, Y.Fujii, Y.Nakamura, T.Hosaka, M.Okada-Iwabu, M.Iwabu, T Someya, M.Shirouzu, T.Yamauchi, T.Kadowaki, S.Yokoyama
compound source
Molecule: Adiponectin Receptor Protein 2
Chain: A
Synonym: Progestin And Adipoq Receptor Family Member 2,Prog Adipoq Receptor Family Member II;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Adipor2, Paqr2
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111

Molecule: The Heavy Chain Variable Domain (Antibody)
Chain: H
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_taxid: 10090
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: The Light Chain Variable Domain (Antibody)
Chain: L
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_taxid: 10090
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 2 21
R_factor 0.229 R_Free 0.267
crystal
cell
length a length b length c angle alpha angle beta angle gamma
74.580 101.030 108.630 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand LPX, OLA, OLB, OLC, ZN enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (188 Kb) [Save to disk]
  • Biological Unit Coordinates (6ks1.pdb1.gz) 179 Kb
  • LPC: Ligand-Protein Contacts for 6KS1
  • CSU: Contacts of Structural Units for 6KS1
  • Structure Factors (1758 Kb)
  • Retrieve 6KS1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6KS1 from S2C, [Save to disk]
    • View 6KS1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6KS1
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6ks1_L] [6ks1_H] [6ks1_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6KS1
  • Community annotation for 6KS1 at PDBWiki (http://pdbwiki.org)

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