6L84 Dna Binding Protein Dna date Nov 04, 2019
title Complex Of Dna Polymerase Iv And D-Dna Duplex
authors H.S.Chung, J.An, D.Hwang
compound source
Molecule: Dna Polymerase Iv
Chain: A
Synonym: Pol Iv
Ec: 2.7.7.7
Engineered: Yes
Other_details: Sf File Contains Friedel Pairs.
 Organism_scientific: Saccharolobus Solfataricus (Strain Atc Dsm 1617 Jcm 11322 P2);
Organism_taxid: 273057
Strain: Atcc 35092 Dsm 1617 Jcm 11322 P2
Gene: Dbh, Dpo4, Sso2448
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna (5'-D(Gpgpgpgpgpapapgpgpaptptpcp
Chain: P
Engineered: Yes
Other_details: Sf File Contains Friedel Pairs.
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Dna (5'-D(Pcpgpgpapaptpcpcptptpcpcpc 3');
Chain: T
Engineered: Yes
Other_details: Sf File Contains Friedel Pairs.
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 2 21 21
R_factor 0.182 R_Free 0.226
crystal
cell
length a length b length c angle alpha angle beta angle gamma
52.763 98.664 100.769 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.60 Å
ligand CA enzyme Transferase E.C.2.7.7.7 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe crystal structure of a natural DNA polymerase complexed with mirror DNA., An J, Choi J, Hwang D, Park J, Pemble CW 4th, Duong THM, Kim KR, Ahn H, Chung HS, Ahn DR, Chem Commun (Camb). 2020 Feb 18;56(14):2186-2189. doi: 10.1039/c9cc09351f. Epub, 2020 Jan 23. PMID:31971182
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (145 Kb) [Save to disk]
  • Biological Unit Coordinates (6l84.pdb1.gz) 139 Kb
  • LPC: Ligand-Protein Contacts for 6L84
  • CSU: Contacts of Structural Units for 6L84
  • Structure Factors (166 Kb)
  • Retrieve 6L84 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6L84 from S2C, [Save to disk]
    • View 6L84 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6L84
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6l84_P] [6l84_A] [6l84_T]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6L84
  • Community annotation for 6L84 at PDBWiki (http://pdbwiki.org)

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