6LZ9 Immune System date Feb 18, 2020
title T8e4 Antibody Fab Complexed With The Active Form Of Hgf
authors Y.Kitago, M.Umitsu, J.Takagi
compound source
Molecule: Hepatocyte Growth Factor
Chain: A
Fragment: K4 Domain
Synonym: Hepatopoietin-A,Scatter Factor,Sf
Engineered: Yes
Mutation: Yes
Other_details: This Molecule Was Produced As One Polypeptid Chain B, And This Chain If N-Terminal Portion. After The Ar Enzymatic Cleavage With Factor Xa, They Are Connected With By A Disulfide Bond.;
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hgf, Hpta
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
Expression_system_cell_line: Expi293f

Molecule: Hepatocyte Growth Factor
Chain: B
Fragment: Sp Domain
Synonym: Hepatopoietin-A,Scatter Factor,Sf
Engineered: Yes
Mutation: Yes
Other_details: This Molecule Was Produced As One Polypeptid Chain A, And This Chain If C-Terminal Portion. After The Ar Enzymatic Cleavage With Factor Xa, They Are Connected With By A Disulfide Bond.;

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hgf, Hpta
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
Expression_system_cell_line: Expi293f

Molecule: Heavy Chain Of T8e4 Fab Fragment
Chain: H
Engineered: Yes
Other_details: Pca Residue At The N-Terminus Is The Self-Cy Residue.;

Organism_scientific: Mus Musculus
Organism_taxid: 10090
Expression_system: Hybrid
Expression_system_taxid: 37965
Expression_system_cell: Hybridoma
Other_details: B Cells Fused With Myeloma Cells

Molecule: Light Chain Of T8e4 Fab Fragment
Chain: L
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_taxid: 10090
Expression_system: Hybrid
Expression_system_taxid: 37965
Expression_system_cell: Hybridoma
Other_details: B Cells Fused With Myeloma Cells
symmetry Space Group: P 63 2 2
R_factor 0.248 R_Free 0.298
crystal
cell
length a length b length c angle alpha angle beta angle gamma
176.180 176.180 122.960 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.80 Å
ligand PCA enzyme
Gene
Ontology
ChainFunctionProcessComponent
B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (214 Kb) [Save to disk]
  • Biological Unit Coordinates (6lz9.pdb1.gz) 208 Kb
  • LPC: Ligand-Protein Contacts for 6LZ9
  • CSU: Contacts of Structural Units for 6LZ9
  • Structure Factors (259 Kb)
  • Retrieve 6LZ9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6LZ9 from S2C, [Save to disk]
  • View 6LZ9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6LZ9
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6lz9_A] [6lz9_H] [6lz9_B] [6lz9_L]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6LZ9
  • Community annotation for 6LZ9 at PDBWiki (http://pdbwiki.org)

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