6LZG Viral Protein date Feb 19, 2020
title Structure Of Novel Coronavirus Spike Receptor-Binding Domain With Its Receptor Ace2
authors Q.H.Wang, H.Song, J.X.Qi
compound source
Molecule: Angiotensin-Converting Enzyme 2
Chain: A
Synonym: Ace-Related Carboxypeptidase,Angiotensin-Convertin Homolog,Aceh,Metalloprotease Mprot15;
Ec: 3.4.17.23,3.4.17.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ace2, Unq868pro1885
Expression_system: Insect Cell Expression Vector Ptie1
Expression_system_taxid: 266783

Molecule: Spike Protein S1
Chain: B
Synonym: S Glycoprotein,E2,Peplomer Protein,Spike Glycoprot
Engineered: Yes

Organism_scientific: Severe Acute Respiratory Syndrome Coro 2;
Organism_common: 2019-Ncov
Organism_taxid: 2697049
Gene: S, 2
Expression_system: Insect Cell Expression Vector Ptie1
Expression_system_taxid: 266783
symmetry Space Group: P 41 21 2
R_factor 0.188 R_Free 0.216
crystal
cell
length a length b length c angle alpha angle beta angle gamma
104.448 104.448 229.786 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand NAG, ZN enzyme Hydrolase E.C.3.4.17.23 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural and Functional Basis of SARS-CoV-2 Entry by Using Human ACE2., Wang Q, Zhang Y, Wu L, Niu S, Song C, Zhang Z, Lu G, Qiao C, Hu Y, Yuen KY, Wang Q, Zhou H, Yan J, Qi J, Cell. 2020 Apr 7. pii: S0092-8674(20)30338-X. doi: 10.1016/j.cell.2020.03.045. PMID:32275855
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (276 Kb) [Save to disk]
  • Biological Unit Coordinates (6lzg.pdb1.gz) 268 Kb
  • LPC: Ligand-Protein Contacts for 6LZG
  • CSU: Contacts of Structural Units for 6LZG
  • Structure Factors (666 Kb)
  • Retrieve 6LZG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6LZG from S2C, [Save to disk]
  • View 6LZG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6LZG
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6lzg_A] [6lzg_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6LZG
  • Community annotation for 6LZG at PDBWiki (http://pdbwiki.org)

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