6M17 Membrane Protein Viral Protein date Feb 24, 2020
title The 2019-Ncov Rbdace2-B0at1 Complex
authors R.H.Yan, Y.Y.Zhang, Y.N.Li, L.Xia, Y.Y.Guo, Q.Zhou
compound source
Molecule: Sodium-Dependent Neutral Amino Acid Transporter B
Chain: A, C
Synonym: Solute Carrier Family 6 Member 19,System B(0) Neut Acid Transporter At1;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Slc6a19, B0at1
Expression_system: Homo Sapiens
Expression_system_taxid: 9606

Molecule: Angiotensin-Converting Enzyme 2
Chain: B, D
Synonym: Ace-Related Carboxypeptidase,Angiotensin-Convertin Homolog,Aceh,Metalloprotease Mprot15;
Ec: 3.4.17.23,3.4.17.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ace2, Unq868pro1885
Expression_system: Homo Sapiens
Expression_system_taxid: 9606

Molecule: Spike Protein S1
Chain: E, F
Synonym: S Glycoprotein,E2,Peplomer Protein,Sars-Cov-2 Rece Binding Domain;
Engineered: Yes
Organism_scientific: Severe Acute Respiratory Syndrome Coro 2;
Organism_common: 2019-Ncov
Organism_taxid: 2697049
Gene: S, 2
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 2.90 Å
ligand LEU, NAG, ZN enzyme Hydrolase E.C.3.4.17.23 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, C
  • amino acid transmembrane tra...


    • D, B
  • carboxypeptidase activity


    • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (467 Kb) [Save to disk]
  • Biological Unit Coordinates (6m17.pdb1.gz) 450 Kb
  • LPC: Ligand-Protein Contacts for 6M17
  • CSU: Contacts of Structural Units for 6M17
  • Retrieve 6M17 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6M17 from S2C, [Save to disk]
    • View 6M17 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6M17
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6m17_E] [6m17_C] [6m17_F] [6m17_B] [6m17_D] [6m17_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6M17
  • Community annotation for 6M17 at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science