6MDH Signaling Protein date Sep 04, 2018
title X-Ray Crystal Structure Of Isg15 From Myotis Davidii
authors O.Y.Goodwin, C.A.Langley, J.V.Dzimianski, C.M.Daczkowski, S.D.Pe
compound source
Molecule: Ubiquitin-Like Protein Isg15
Chain: A
Engineered: Yes
 Organism_scientific: Myotis Davidii
Organism_common: David'S Myotis
Organism_taxid: 225400
Gene: Mda_glean10007532
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: I 21 21 21
R_factor 0.161 R_Free 0.196
crystal
cell
length a length b length c angle alpha angle beta angle gamma
66.546 68.426 72.538 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.37 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of interferon-stimulated gene product 15 (ISG15) from the bat species Myotis davidii and the impact of interdomain ISG15 interactions on viral protein engagement., Langley C, Goodwin O, Dzimianski JV, Daczkowski CM, Pegan SD, Acta Crystallogr D Struct Biol. 2019 Jan 1;75(Pt 1):21-31. doi:, 10.1107/S2059798318015322. Epub 2019 Jan 4. PMID:30644842
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (66 Kb) [Save to disk]
  • Biological Unit Coordinates (6mdh.pdb1.gz) 62 Kb
  • CSU: Contacts of Structural Units for 6MDH
  • Structure Factors (861 Kb)
  • Retrieve 6MDH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6MDH from S2C, [Save to disk]
    • View 6MDH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6MDH
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6mdh_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6MDH
  • Community annotation for 6MDH at PDBWiki (http://pdbwiki.org)

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