6MGL Hydrolase date Sep 14, 2018
title Crystal Structure Of The Catalytic Domain From Gh74 Enzyme P Paenibacillus Odorifer, D60a Mutant In Complex With Xxlg An Xyloglucan
authors P.J.Stogios, T.Skarina, G.Arnal, N.Watanabe, H.Brumer, A.Savchenk
compound source
Molecule: Xyloglucanase
Chain: A
Engineered: Yes
Mutation: Yes
 Organism_scientific: Paenibacillus Odorifer
Organism_taxid: 189426
Gene: Bsk60_29080
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P15tv-Lic
symmetry Space Group: P 21 21 21
R_factor 0.148 R_Free 0.177
crystal
cell
length a length b length c angle alpha angle beta angle gamma
61.170 100.840 118.689 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.50 Å
ligand BGC, CL, GAL, GOL, MG, PE3, XYS enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (270 Kb) [Save to disk]
  • Biological Unit Coordinates (6mgl.pdb1.gz) 263 Kb
  • LPC: Ligand-Protein Contacts for 6MGL
  • CSU: Contacts of Structural Units for 6MGL
  • Structure Factors (4942 Kb)
  • Retrieve 6MGL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6MGL from S2C, [Save to disk]
    • View 6MGL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6MGL
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6mgl_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6MGL
  • Community annotation for 6MGL at PDBWiki (http://pdbwiki.org)

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