6MJ0 Rna date Sep 20, 2018
title Crystal Structure Of The Complete Turnip Yellow Mosaic Virus
authors E.W.Hartwick, D.A.Costantino, A.Macfadden, J.C.Nix, S.Tian, R.Das J.S.Kieft
compound source
Molecule: Rna (101-Mer)
Chain: A, B
Engineered: Yes
 Synthetic: Yes
Organism_scientific: Turnip Yellow Mosaic Virus
Organism_taxid: 12154
symmetry Space Group: I 2 2 2
R_factor 0.227 R_Free 0.266
crystal
cell
length a length b length c angle alpha angle beta angle gamma
103.032 129.126 172.005 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.10 Å
Primary referenceRibosome-induced RNA conformational changes in a viral 3'-UTR sense and regulate translation levels., Hartwick EW, Costantino DA, MacFadden A, Nix JC, Tian S, Das R, Kieft JS, Nat Commun. 2018 Nov 29;9(1):5074. doi: 10.1038/s41467-018-07542-x. PMID:30498211
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (88 Kb) [Save to disk]
  • Biological Unit Coordinates (6mj0.pdb1.gz) 42 Kb
  • Biological Unit Coordinates (6mj0.pdb2.gz) 42 Kb
  • CSU: Contacts of Structural Units for 6MJ0
  • Structure Factors (606 Kb)
  • Retrieve 6MJ0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6MJ0 from S2C, [Save to disk]
    • View 6MJ0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6MJ0
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6mj0_B] [6mj0_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6MJ0
  • Community annotation for 6MJ0 at PDBWiki (http://pdbwiki.org)

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