6MKS Protein Fibril date Sep 26, 2018
title Cryo-Em Structure Of Nlrc4-Card Filament
authors W.Zheng, M.Matyszewski, J.Sohn, E.H.Egelman
compound source
Molecule: Chimera Protein Of Nlr Family Card Domain-Contain Protein 4 And Egfp;
Chain: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R V, W, X, Y, Z, A, B, C, D, E;
Synonym: Card,Lrr,And Nacht-Containing Protein,Clan Protein Recruitment Domain-Containing Protein 12,Ice Protease-Activ Factor,Ipaf;
Engineered: Yes
Organism_scientific: Homo Sapiens, Vaccinia Virus
Organism_common: Human
Organism_taxid: 9606, 10245
Gene: Nlrc4, Card12, Clan, Clan1, Ipaf, Unq6189pro20215, E
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_plasmid: Pet21b
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.40 Å
Gene
Ontology
ChainFunctionProcessComponent
S, F, a, T, N, K, d, Y, E, V, Z, Q, M, C, L, e, A, J, O, W, X, P, B, H, c, b, D, R, I, G, U


Primary referenceCryo-EM structure of the NLRC4(CARD) filament provides insights into how symmetric and asymmetric supramolecular structures drive inflammasome assembly., Matyszewski M, Zheng W, Lueck J, Antiochos B, Egelman EH, Sohn J, J Biol Chem. 2018 Nov 1. pii: RA118.006050. doi: 10.1074/jbc.RA118.006050. PMID:30385506
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (432 Kb) [Save to disk]
  • Biological Unit Coordinates (6mks.pdb1.gz) 402 Kb
  • CSU: Contacts of Structural Units for 6MKS
  • Retrieve 6MKS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6MKS from S2C, [Save to disk]
  • View 6MKS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6MKS
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6mks_a] [6mks_R] [6mks_Y] [6mks_I] [6mks_Q] [6mks_b] [6mks_O] [6mks_T] [6mks_H] [6mks_B] [6mks_S] [6mks_P] [6mks_A] [6mks_e] [6mks_M] [6mks_d] [6mks_c] [6mks_L] [6mks_W] [6mks_E] [6mks_G] [6mks_J] [6mks_X] [6mks_D] [6mks_N] [6mks_V] [6mks_F] [6mks_U] [6mks_K] [6mks_C] [6mks_Z]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6MKS
  • Community annotation for 6MKS at PDBWiki (http://pdbwiki.org)

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