6MQZ Lipid Binding Protein date Oct 11, 2018
title Crystal Structure Of The 13-Cis Product Of The All-Trans Ret R111k:Y134f:T54v:R132q:P39y:R59y:L121e Mutant Of Human Cell Retinoic Acid Binding Protein II Irradiated With 400 Nm Las Minutes) At 2.07 Angstrom
authors A.Ghanbarpour, J.Geiger
compound source
Molecule: Cellular Retinoic Acid-Binding Protein 2
Chain: A
Synonym: Cellular Retinoic Acid-Binding Protein II,Crabp-II
Engineered: Yes
Mutation: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Crabp2
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
symmetry Space Group: P 31 2 1
R_factor 0.193 R_Free 0.252
crystal
cell
length a length b length c angle alpha angle beta angle gamma
58.567 58.567 98.974 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.07 Å
ligand GOL, RET enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceMimicking Microbial Rhodopsin Isomerization in a Single Crystal., Ghanbarpour A, Nairat M, Nosrati M, Santos EM, Vasileiou C, Dantus M, Borhan B, Geiger JH, J Am Chem Soc. 2018 Dec 22. doi: 10.1021/jacs.8b12493. PMID:30580520
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (30 Kb) [Save to disk]
  • Biological Unit Coordinates (6mqz.pdb1.gz) 25 Kb
  • Biological Unit Coordinates (6mqz.pdb2.gz) 49 Kb
  • LPC: Ligand-Protein Contacts for 6MQZ
  • CSU: Contacts of Structural Units for 6MQZ
  • Structure Factors (306 Kb)
  • Retrieve 6MQZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6MQZ from S2C, [Save to disk]
    • View 6MQZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6MQZ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6mqz_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6MQZ
  • Community annotation for 6MQZ at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science