6MRW Membrane Protein, Toxin date Oct 15, 2018
title 14-Meric Clya Pore Complex
authors W.Peng, M.De Souza Santos, Y.Li, D.R.Tomchick, K.Orth
compound source
Molecule: Hemolysin E, Chromosomal
Chain: A, B, C, D, E, F, G, H, I, J, K, L, M, N
Synonym: Cytotoxin Clya,Hemolysis-Inducing Protein,Latent P Forming 34 Kda Hemolysin,Silent Hemolysin Shea;
Engineered: Yes
Organism_scientific: Escherichia Coli (Strain K12)
Organism_taxid: 83333
Strain: K12
Gene: Hlye, Clya, Hpr, Shea, Ycgd, B1182, Jw5181
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 4.30 Å
Gene
Ontology
ChainFunctionProcessComponent
F, A, J, N, K, E, B, H, M, C, D, I, G, L


Primary referenceHigh-resolution cryo-EM structures of the E. coli hemolysin ClyA oligomers., Peng W, de Souza Santos M, Li Y, Tomchick DR, Orth K, PLoS One. 2019 May 2;14(5):e0213423. doi: 10.1371/journal.pone.0213423., eCollection 2019. PMID:31048915
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (724 Kb) [Save to disk]
  • Biological Unit Coordinates (6mrw.pdb1.gz) 718 Kb
  • CSU: Contacts of Structural Units for 6MRW
  • Retrieve 6MRW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6MRW from S2C, [Save to disk]
  • View 6MRW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6MRW
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6mrw_E] [6mrw_A] [6mrw_D] [6mrw_K] [6mrw_M] [6mrw_J] [6mrw_H] [6mrw_F] [6mrw_G] [6mrw_B] [6mrw_N] [6mrw_I] [6mrw_C] [6mrw_L]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6MRW
  • Community annotation for 6MRW at PDBWiki (http://pdbwiki.org)

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