6MUX Hydrolase date Oct 23, 2018
title The Structure Of The Plasmodium Falciparum 20s Proteasome In With One Pa28 Activator
authors R.D.Metcalfe, S.C.Xie, E.Hanssen, D.L.Gillett, A.P.Leis, L.Tilley M.D.W.Griffin
compound source
Molecule: 20s Proteasome Alpha-1 Subunit
Chain: A, O
Ec: 3.4.25.1
 Organism_scientific: Plasmodium Falciparum 3d7
Organism_taxid: 36329
Strain: Isolate 3d7

Molecule: 20s Proteasome Alpha-2 Subunit
Chain: B, P
Ec: 3.4.25.1
Organism_scientific: Plasmodium Falciparum 3d7
Organism_taxid: 36329
Strain: Isolate 3d7

Molecule: 20s Proteasome Alpha-3 Subunit
Chain: C, Q
Ec: 3.4.25.1
Organism_scientific: Plasmodium Falciparum 3d7
Organism_taxid: 36329
Strain: Isolate 3d7

Molecule: 20s Proteasome Alpha-4 Subunit
Chain: D, R
Ec: 3.4.25.1
Organism_scientific: Plasmodium Falciparum 3d7
Organism_taxid: 36329
Strain: Isolate 3d7

Molecule: 20s Proteasome Alpha-5 Subunit
Chain: E, S
Ec: 3.4.25.1
Organism_scientific: Plasmodium Falciparum 3d7
Organism_taxid: 36329
Strain: Isolate 3d7

Molecule: 20s Proteasome Alpha-6 Subunit
Chain: F, T
Ec: 3.4.25.1
Organism_scientific: Plasmodium Falciparum 3d7
Organism_taxid: 36329
Strain: Isolate 3d7

Molecule: 20s Proteasome Alpha-7 Subunit
Chain: G, U
Ec: 3.4.25.1
Organism_scientific: Plasmodium Falciparum 3d7
Organism_taxid: 36329
Strain: Isolate 3d7

Molecule: 20s Proteasome Beta-1 Subunit
Chain: H, V
Ec: 3.4.25.1
Organism_scientific: Plasmodium Falciparum 3d7
Organism_taxid: 36329
Strain: Isolate 3d7

Molecule: 20s Proteasome Beta-2 Subunit
Chain: I, W
Ec: 3.4.25.1
Organism_scientific: Plasmodium Falciparum 3d7
Organism_taxid: 36329
Strain: Isolate 3d7

Molecule: 20s Proteasome Beta-3 Subunit
Chain: J, X
Ec: 3.4.25.1
Organism_scientific: Plasmodium Falciparum 3d7
Organism_taxid: 36329
Strain: Isolate 3d7

Molecule: 20s Proteasome Beta-4 Subunit
Chain: K, Y
Ec: 3.4.25.1
Organism_scientific: Plasmodium Falciparum 3d7
Organism_taxid: 36329
Strain: Isolate 3d7

Molecule: 20s Proteasome Beta-5 Subunit
Chain: L, Z
Ec: 3.4.25.1
Organism_scientific: Plasmodium Falciparum 3d7
Organism_taxid: 36329
Strain: Isolate 3d7

Molecule: 20s Proteasome Beta-6 Subunit
Chain: M, a
Ec: 3.4.25.1
Organism_scientific: Plasmodium Falciparum 3d7
Organism_taxid: 36329
Strain: Isolate 3d7

Molecule: 20s Proteasome Beta-7 Subunit
Chain: N, b
Ec: 3.4.25.1
Organism_scientific: Plasmodium Falciparum 3d7
Organism_taxid: 36329
Strain: Isolate 3d7

Molecule: Proteasome Activator Pa28
Chain: c, d, e, f, g, h, I
Engineered: Yes
Organism_scientific: Plasmodium Falciparum 3d7
Organism_taxid: 36329
Strain: Isolate 3d7
Gene: Pf3d7_0907700
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.90 Å
ligand
enzyme Hydrolase E.C.3.4.25.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, O


B, P


D, R


G, U


H, V


J, X


K, Y


N, b


Q, C


S, E


T, F


Z, W, I, L


a, M


d, g, e, c, h, f, i


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1095 Kb) [Save to disk]
  • Biological Unit Coordinates (6mux.pdb1.gz) 1084 Kb
  • CSU: Contacts of Structural Units for 6MUX
  • Retrieve 6MUX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6MUX from S2C, [Save to disk]
    • View 6MUX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6MUX
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6mux_Z] [6mux_M] [6mux_f] [6mux_J] [6mux_C] [6mux_I] [6mux_G] [6mux_g] [6mux_H] [6mux_K] [6mux_O] [6mux_b] [6mux_Y] [6mux_N] [6mux_a] [6mux_P] [6mux_U] [6mux_d] [6mux_L] [6mux_W] [6mux_S] [6mux_e] [6mux_h] [6mux_T] [6mux_V] [6mux_X] [6mux_c] [6mux_i] [6mux_F] [6mux_A] [6mux_Q] [6mux_D] [6mux_B] [6mux_E] [6mux_R]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6MUX
  • Community annotation for 6MUX at PDBWiki (http://pdbwiki.org)

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