6MX4 Virus date Oct 30, 2018
title Cryoem Structure Of Chimeric Eastern Equine Encephalitis Vir
authors S.S.Hasan, C.Sun, A.S.Kim, Y.Watanabe, C.L.Chen, T.Klose, G.Buda, M M.S.Diamond, W.B.Klimstra, M.G.Rossmann
compound source
Molecule: E1
Chain: A, D, G, J
Fragment: Ectodomain (Unp Residues 802-1242)
Engineered: Yes
Organism_scientific: Eastern Equine Encephalitis Virus
Organism_common: Eeev
Organism_taxid: 11021
Expression_system: Mesocricetus Auratus
Expression_system_common: Golden Hamster
Expression_system_taxid: 10036
Expression_system_cell: Bhk-15

Molecule: E2
Chain: B, E, H, K
Fragment: Ectodomain (Unp Residues 325-744)
Engineered: Yes

Organism_scientific: Eastern Equine Encephalitis Virus
Organism_common: Eeev
Organism_taxid: 11021
Expression_system: Mesocricetus Auratus
Expression_system_common: Golden Hamster
Expression_system_taxid: 10036
Expression_system_cell: Bhk-15

Molecule: Capsid
Chain: C, F, I, L
Fragment: N-Terminal Domain (Unp Residues 1-260)
Synonym: P130
Engineered: Yes

Organism_scientific: Eastern Equine Encephalitis Virus
Organism_common: Eeev
Organism_taxid: 11021
Expression_system: Mesocricetus Auratus
Expression_system_common: Golden Hamster
Expression_system_taxid: 10036
Expression_system_cell: Bhk-15
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 4.40 Å
ligand NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, J, D, G


F, C, I, L


K, E, B, H


Primary referenceCryo-EM Structures of Eastern Equine Encephalitis Virus Reveal Mechanisms of Virus Disassembly and Antibody Neutralization., Hasan SS, Sun C, Kim AS, Watanabe Y, Chen CL, Klose T, Buda G, Crispin M, Diamond MS, Klimstra WB, Rossmann MG, Cell Rep. 2018 Dec 11;25(11):3136-3147.e5. doi: 10.1016/j.celrep.2018.11.067. PMID:30540945
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (578 Kb) [Save to disk]
  • Biological Unit Coordinates (6mx4.pdb1.gz) 33489 Kb
  • LPC: Ligand-Protein Contacts for 6MX4
  • CSU: Contacts of Structural Units for 6MX4
  • Retrieve 6MX4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6MX4 from S2C, [Save to disk]
  • View 6MX4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6MX4
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6mx4_C] [6mx4_H] [6mx4_I] [6mx4_D] [6mx4_K] [6mx4_G] [6mx4_B] [6mx4_F] [6mx4_A] [6mx4_E] [6mx4_L] [6mx4_J]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6MX4
  • Community annotation for 6MX4 at PDBWiki (http://pdbwiki.org)

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