6NIL	Antiviral Protein	date	Dec 29, 2018
title	Cryoem Structure Of The Truncated Hiv-1 Vifcbfbetaa3f Comp
authors	Y.Hu, Y.Xiong
compound		source
Molecule: Dna Dc->Du-Editing Enzyme Apobec-3f Chain: A, D, G, J Fragment: C-Terminal Domain Synonym: Apolipoprotein B Mrna-Editing Enzyme Catalytic Pol Like 3f,A3f; Ec: 3.5.4.38 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Apobec3f Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Core-Binding Factor Subunit Beta Chain: B, E, H, K Synonym: Cbf-Beta,Polyomavirus Enhancer-Binding Protein 2 B Subunit,Pebp2-Beta,Sl3-3 Enhancer Factor 1 Subunit Beta,Sl3 Binding Factor Beta Subunit; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Cbfb Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Virion Infectivity Factor Chain: C, F, I, L Synonym: Vif,Sor Protein Engineered: Yes Other_details: Residues 114-157 Was Replaced With A 6 Amino Linker (Easegs). The C-Terminal Residues 177-192 Were Delet		Organism_scientific: Human Immunodeficiency Virus 1 Organism_common: Hiv-1 Organism_taxid: 11676 Gene: Vif Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 1	R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma 1.000 1.000 1.000 90.00 90.00 90.00
method	Electron Microscopy	resolution	3.90 Å
ligand	ZN	enzyme	Hydrolase E.C.3.5.4.38 BRENDA
Gene Ontology	Chain Function Process Component A, J, D, G F, C, I, L K, E, B, H

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (315 Kb) [Save to disk] Biological Unit Coordinates (6nil.pdb1.gz) 309 Kb LPC: Ligand-Protein Contacts for 6NIL CSU: Contacts of Structural Units for 6NIL Retrieve 6NIL in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6NIL from S2C, [Save to disk]

View 6NIL in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 6NIL

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6nil_C] [6nil_D] [6nil_I] [6nil_H] [6nil_L] [6nil_A] [6nil_B] [6nil_G] [6nil_F] [6nil_E] [6nil_K] [6nil_J] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 6NIL

Community annotation for 6NIL at PDBWiki (http://pdbwiki.org)

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