6NMF date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand CDL, CHD, CU, CUA, DMU, FME, HEA, MG, NA, PEK, PGV, PSC, SAC, TGL, TPO, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
I, V
  • cytochrome-c oxidase activit...


    • J, W


    N, A


    O, B
  • cytochrome-c oxidase activit...


    • P, C
  • cytochrome-c oxidase activit...
  • oxidoreduction-driven active...


    • Q, D


    R, E


    S, F


    T, G


    U, H


    X, K


    Y, L


    Z, M


    Primary referenceSnapshot of an oxygen intermediate in the catalytic reaction of cytochrome c oxidase., Ishigami I, Lewis-Ballester A, Echelmeier A, Brehm G, Zatsepin NA, Grant TD, Coe JD, Lisova S, Nelson G, Zhang S, Dobson ZF, Boutet S, Sierra RG, Batyuk A, Fromme P, Fromme R, Spence JCH, Ros A, Yeh SR, Rousseau DL, Proc Natl Acad Sci U S A. 2019 Feb 26;116(9):3572-3577. doi:, 10.1073/pnas.1814526116. Epub 2019 Feb 11. PMID:30808749
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (663 Kb) [Save to disk]
  • Biological Unit Coordinates (6nmf.pdb1.gz) 640 Kb
  • LPC: Ligand-Protein Contacts for 6NMF
  • CSU: Contacts of Structural Units for 6NMF
  • Structure Factors (5284 Kb)
  • Retrieve 6NMF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6NMF from S2C, [Save to disk]
    • View 6NMF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6nmf_R] [6nmf_L] [6nmf_M] [6nmf_N] [6nmf_O] [6nmf_A] [6nmf_B] [6nmf_C] [6nmf_D] [6nmf_E] [6nmf_F] [6nmf_G] [6nmf_H] [6nmf_I] [6nmf_J] [6nmf_K] [6nmf_P] [6nmf_Q] [6nmf_S] [6nmf_T] [6nmf_U] [6nmf_V] [6nmf_W] [6nmf_X] [6nmf_Y] [6nmf_Z]
  • SWISS-PROT database:

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