6NOF Rna Binding Protein Rna date Jan 16, 2019
title Crystal Structure Of Fbf-2 Repeat 5 Mutant (C363a, R364y, Q3 Complex With 8-Nt Rna
authors K.L.Mccann, Y.Wang, C.Qiu, T.M.T.Hall
compound source
Molecule: Fem-3 Mrna-Binding Factor 2
Chain: A
Engineered: Yes
Mutation: Yes
 Organism_scientific: Caenorhabditis Elegans
Organism_taxid: 6239
Gene: Fbf-2, F21h12.5
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Rna (5'-R(Upgpupapapapupa)-3')
Chain: B
Engineered: Yes
Synthetic: Yes
Organism_scientific: Caenorhabditis Elegans
Organism_taxid: 6239
symmetry Space Group: P 61
R_factor 0.164 R_Free 0.222
crystal
cell
length a length b length c angle alpha angle beta angle gamma
96.544 96.544 101.066 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.25 Å
ligand EDO enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceEngineering a conserved RNA regulatory protein repurposes its biological function in vivo., Bhat VD, McCann KL, Wang Y, Fonseca DR, Shukla T, Alexander JC, Qiu C, Wickens M, Lo TW, Tanaka Hall TM, Campbell ZT, Elife. 2019 Jan 17;8. pii: 43788. doi: 10.7554/eLife.43788. PMID:30652968
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (148 Kb) [Save to disk]
  • Biological Unit Coordinates (6nof.pdb1.gz) 143 Kb
  • LPC: Ligand-Protein Contacts for 6NOF
  • CSU: Contacts of Structural Units for 6NOF
  • Structure Factors (189 Kb)
  • Retrieve 6NOF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6NOF from S2C, [Save to disk]
    • View 6NOF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6NOF
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6nof_A] [6nof_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6NOF
  • Community annotation for 6NOF at PDBWiki (http://pdbwiki.org)

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