6NQD		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	BMA, MAN, NAG	enzyme
Gene Ontology	Chain Function Process Component I, E, A J, F, B
Primary reference	A sequestered fusion peptide in the structure of an HIV-1 transmitted founder envelope trimer., Ananthaswamy N, Fang Q, AlSalmi W, Jain S, Chen Z, Klose T, Sun Y, Liu Y, Mahalingam M, Chand S, Tovanabutra S, Robb ML, Rossmann MG, Rao VB, Nat Commun. 2019 Feb 20;10(1):873. doi: 10.1038/s41467-019-08825-7. PMID:30787293

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (383 Kb) [Save to disk] Biological Unit Coordinates (6nqd.pdb1.gz) 360 Kb LPC: Ligand-Protein Contacts for 6NQD CSU: Contacts of Structural Units for 6NQD Retrieve 6NQD in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6NQD from S2C, [Save to disk]

View 6NQD in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6nqd_G] [6nqd_F] [6nqd_H] [6nqd_I] [6nqd_J] [6nqd_K] [6nqd_L] [6nqd_A] [6nqd_B] [6nqd_C] [6nqd_D] [6nqd_E] SWISS-PROT database:

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