6O0Q Signaling Protein date Feb 17, 2019
title Crystal Structure Of The Tir Domain From Human Sarm1 In Comp Ribose
authors S.Horsefield, H.Burdett, X.Zhang, M.K.Manik, Y.Shi, J.Chen, Q.Tian J.Gilley, J.Lai, W.Gu, M.Rank, N.Deerain, L.Casey, D.J.Ericsson, G R.O.Hughes, T.Bosanac, M.Von Itzstein, J.P.Rathjen, J.D.Nanson, I.B.Dry, S.J.Williams, B.J.Staskawicz, M.P.Coleman, T.Ve, P.N.Do B.Kobe
compound source
Molecule: Sterile Alpha And Tir Motif-Containing Protein 1
Chain: A, B
Synonym: Sterile Alpha And Armadillo Repeat Protein,Sterile Motif Domain-Containing Protein 2,Sam Domain-Containing Pro Tir-1 Homolog;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Sarm1, Kiaa0524, Samd2, Sarm
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 2 21 21
R_factor 0.172 R_Free 0.210
crystal
cell
length a length b length c angle alpha angle beta angle gamma
32.986 86.019 116.684 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand BDR, CL enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (149 Kb) [Save to disk]
  • Biological Unit Coordinates (6o0q.pdb1.gz) 72 Kb
  • Biological Unit Coordinates (6o0q.pdb2.gz) 72 Kb
  • LPC: Ligand-Protein Contacts for 6O0Q
  • CSU: Contacts of Structural Units for 6O0Q
  • Structure Factors (775 Kb)
  • Retrieve 6O0Q in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6O0Q from S2C, [Save to disk]
    • View 6O0Q in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6O0Q
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6o0q_A] [6o0q_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6O0Q
  • Community annotation for 6O0Q at PDBWiki (http://pdbwiki.org)

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