6O8Q Dna Binding Protein Dna date Mar 11, 2019
title Huaa 19bp Sym Dna Ph 4.5
authors S.G.Remesh, M.Hammel
compound source
Molecule: Dna-Binding Protein Hu-Alpha
Chain: A, B, C, D, E, F, G, H, I, J
Synonym: Hu-2,Ns2
Engineered: Yes
 Organism_scientific: Escherichia Coli (Strain K12)
Organism_taxid: 83333
Strain: K12
Gene: Hupa, B4000, Jw3964
Expression_system: Escherichia Coli 'Bl21-Gold(De3)Plyss Ag
Expression_system_taxid: 866768

Molecule: Dna (57-Mer)
Chain: K
Engineered: Yes
Synthetic: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562

Molecule: Dna (57-Mer)
Chain: L
Engineered: Yes
Synthetic: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.247 R_Free 0.285
crystal
cell
length a length b length c angle alpha angle beta angle gamma
59.411 61.151 351.203 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.22 Å
Gene
Ontology
ChainFunctionProcessComponent
F, A, J, E, B, H, C, D, I, G


Primary referenceNucleoid remodeling during environmental adaptation is regulated by HU-dependent DNA bundling., Remesh SG, Verma SC, Chen JH, Ekman AA, Larabell CA, Adhya S, Hammel M, Nat Commun. 2020 Jun 9;11(1):2905. doi: 10.1038/s41467-020-16724-5. PMID:32518228
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (173 Kb) [Save to disk]
  • Biological Unit Coordinates (6o8q.pdb1.gz) 168 Kb
  • CSU: Contacts of Structural Units for 6O8Q
  • Structure Factors (536 Kb)
  • Retrieve 6O8Q in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6O8Q from S2C, [Save to disk]
    • View 6O8Q in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6O8Q
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6o8q_D] [6o8q_K] [6o8q_C] [6o8q_L] [6o8q_F] [6o8q_I] [6o8q_A] [6o8q_E] [6o8q_B] [6o8q_J] [6o8q_H] [6o8q_G]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6O8Q
  • Community annotation for 6O8Q at PDBWiki (http://pdbwiki.org)

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