6O96 Dot1L bound to the H2BK120 Ubiquitinated nucleosome date
authors Valencia-Sanchez, M.I., Ioannes, P.E.De., Miao, W., Vasilyev, N., Chen, R., Nudler, E., Armache, J.P., Armache, K.J.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.50
ligand SAH enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, E


C, G


F, B


H, D


K


Primary referenceStructural Basis of Dot1L Stimulation by Histone H2B Lysine 120 Ubiquitination., Valencia-Sanchez MI, De Ioannes P, Wang M, Vasilyev N, Chen R, Nudler E, Armache JP, Armache KJ, Mol Cell. 2019 Apr 8. pii: S1097-2765(19)30233-3. doi:, 10.1016/j.molcel.2019.03.029. PMID:30981630
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (270 Kb) [Save to disk]
  • Biological Unit Coordinates (6o96.pdb1.gz) 265 Kb
  • LPC: Ligand-Protein Contacts for 6O96
  • CSU: Contacts of Structural Units for 6O96
  • Retrieve 6O96 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6O96 from S2C, [Save to disk]
    • View 6O96 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6O96
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6o96_K] [6o96_E] [6o96_I] [6o96_G] [6o96_D] [6o96_L] [6o96_C] [6o96_A] [6o96_H] [6o96_B] [6o96_F] [6o96_J]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6O96
  • Community annotation for 6O96 at PDBWiki (http://pdbwiki.org)

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