6OWT Protein Transport date May 10, 2019
title Structure Of Sivsmm Nef And Smm Tetherin Bound To The Clathr Ap-2 Complex
authors C.Z.Buffalo, X.Ren, J.H.Hurley
compound source
Molecule: Ap-2 Complex Subunit Alpha
Chain: A
Engineered: Yes
Organism_scientific: Rattus Norvegicus
Organism_common: Rat
Organism_taxid: 10116
Gene: Ap2a2
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Ap-2 Complex Subunit Beta
Chain: B
Synonym: Ap105b,Adaptor Protein Complex Ap-2 Subunit Beta,A Related Protein Complex 2 Subunit Beta,Beta-2-Adaptin,Beta- Clathrin Assembly Protein Complex 2 Beta Large Chain,Plasma Adaptor Ha2ap2 Adaptin Beta Subunit;
Engineered: Yes

Organism_scientific: Rattus Norvegicus
Organism_common: Rat
Organism_taxid: 10116
Gene: Ap2b1, Clapb1
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Adaptor Protein Complex Ap-2, Mu1
Chain: M
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Gene: Ap2m1
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Tetherin,Protein Nef
Chain: T, N
Engineered: Yes
Mutation: Yes
Other_details: Protein Chimera Of The Cytoplasmic Tail Of S Mangabey (Smm) Linked To The N-Terminus Of Siv Smm Tetherin

Organism_scientific: Cercocebus Atys, Simian Immunodeficien
Organism_common: Sooty Mangabey, Siv
Organism_taxid: 9531, 11723
Gene: Bst2, Nef
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Ap-2 Complex Subunit Sigma
Chain: S
Synonym: Adaptor Protein Complex Ap-2 Subunit Sigma,Adaptor Protein Complex 2 Subunit Sigma,Clathrin Assembly Protein 2 Small Chain,Clathrin Coat Assembly Protein Ap17,Clathrin Co Associated Protein Ap17,Plasma Membrane Adaptor Ap-2 17 Kda Sigma-Adaptin 3b,Sigma2-Adaptin;
Engineered: Yes
Mutation: Yes

Organism_scientific: Rattus Norvegicus
Organism_common: Rat
Organism_taxid: 10116
Gene: Ap2s1, Ap17, Claps2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.80 Å
Gene
Ontology
ChainFunctionProcessComponent
A


B


M


S


T, N


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (222 Kb) [Save to disk]
  • Biological Unit Coordinates (6owt.pdb1.gz) 212 Kb
  • CSU: Contacts of Structural Units for 6OWT
  • Retrieve 6OWT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6OWT from S2C, [Save to disk]
  • View 6OWT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6OWT
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6owt_M] [6owt_B] [6owt_S] [6owt_T] [6owt_N] [6owt_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6OWT
  • Community annotation for 6OWT at PDBWiki (http://pdbwiki.org)

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