6P4G Ribosome date May 27, 2019
title Structure Of A Mammalian Small Ribosomal Subunit In Complex Israeli Acute Paralysis Virus Ires (Class 1)
authors F.J.Acosta-Reyes, R.Neupane, J.Frank, I.S.Fernandez
compound source
Molecule: 18s Rrna
Chain: 2
 Organism_scientific: Oryctolagus Cuniculus
Organism_taxid: 9986

Molecule: Us2
Chain: B
Synonym: 37 Kda Laminin Receptor Precursor,37lrp,3767 Kda Receptor,Lrplr,67 Kda Laminin Receptor,67lr,Laminin Recept Laminin-Binding Protein Precursor P40,Lbpp40;
Organism_scientific: Oryctolagus Cuniculus
Organism_common: Rabbit
Organism_taxid: 9986

Molecule: Es1
Chain: C
Organism_scientific: Oryctolagus Cuniculus
Organism_common: Rabbit
Organism_taxid: 9986

Molecule: Us5
Chain: D
Organism_scientific: Oryctolagus Cuniculus
Organism_common: Rabbit
Organism_taxid: 9986

Molecule: Us3
Chain: E
Organism_scientific: Oryctolagus Cuniculus
Organism_common: Rabbit
Organism_taxid: 9986

Molecule: Es4
Chain: F
Organism_scientific: Oryctolagus Cuniculus
Organism_common: Rabbit
Organism_taxid: 9986

Molecule: Us7
Chain: G
Organism_scientific: Oryctolagus Cuniculus
Organism_common: Rabbit
Organism_taxid: 9986

Molecule: Es6
Chain: H
Organism_scientific: Oryctolagus Cuniculus
Organism_common: Rabbit
Organism_taxid: 9986

Molecule: Es7
Chain: I
Organism_scientific: Oryctolagus Cuniculus
Organism_common: Rabbit
Organism_taxid: 9986

Molecule: Es8
Chain: J
Organism_scientific: Oryctolagus Cuniculus
Organism_common: Rabbit
Organism_taxid: 9986

Molecule: Us4
Chain: K
Organism_scientific: Oryctolagus Cuniculus
Organism_common: Rabbit
Organism_taxid: 9986

Molecule: Es10
Chain: L
Organism_scientific: Oryctolagus Cuniculus
Organism_common: Rabbit
Organism_taxid: 9986

Molecule: Us17
Chain: M
Organism_scientific: Oryctolagus Cuniculus
Organism_common: Rabbit
Organism_taxid: 9986

Molecule: Es12
Chain: N
Organism_scientific: Oryctolagus Cuniculus
Organism_common: Rabbit
Organism_taxid: 9986

Molecule: Us15
Chain: O
Organism_scientific: Oryctolagus Cuniculus
Organism_common: Rabbit
Organism_taxid: 9986

Molecule: Us11
Chain: P
Organism_scientific: Oryctolagus Cuniculus
Organism_common: Rabbit
Organism_taxid: 9986

Molecule: Us19
Chain: Q
Organism_scientific: Oryctolagus Cuniculus
Organism_common: Rabbit
Organism_taxid: 9986

Molecule: Us9
Chain: R
Organism_scientific: Oryctolagus Cuniculus
Organism_common: Rabbit
Organism_taxid: 9986

Molecule: Es17
Chain: S
Organism_scientific: Oryctolagus Cuniculus
Organism_common: Rabbit
Organism_taxid: 9986

Molecule: Us13
Chain: T
Organism_scientific: Oryctolagus Cuniculus
Organism_common: Rabbit
Organism_taxid: 9986

Molecule: Es19
Chain: U
Organism_scientific: Oryctolagus Cuniculus
Organism_common: Rabbit
Organism_taxid: 9986

Molecule: Us10
Chain: V
Organism_scientific: Oryctolagus Cuniculus
Organism_common: Rabbit
Organism_taxid: 9986

Molecule: Es21
Chain: W
Organism_scientific: Oryctolagus Cuniculus
Organism_common: Rabbit
Organism_taxid: 9986

Molecule: Us8
Chain: X
Organism_scientific: Oryctolagus Cuniculus
Organism_common: Rabbit
Organism_taxid: 9986

Molecule: Us12
Chain: Y
Organism_scientific: Oryctolagus Cuniculus
Organism_common: Rabbit
Organism_taxid: 9986

Molecule: Es24
Chain: Z
Organism_scientific: Oryctolagus Cuniculus
Organism_common: Rabbit
Organism_taxid: 9986

Molecule: Es25
Chain: a
Organism_scientific: Oryctolagus Cuniculus
Organism_common: Rabbit
Organism_taxid: 9986

Molecule: Es26
Chain: b
Organism_scientific: Oryctolagus Cuniculus
Organism_common: Rabbit
Organism_taxid: 9986

Molecule: Es27
Chain: c
Organism_scientific: Oryctolagus Cuniculus
Organism_common: Rabbit
Organism_taxid: 9986

Molecule: Es28
Chain: d
Organism_scientific: Oryctolagus Cuniculus
Organism_common: Rabbit
Organism_taxid: 9986

Molecule: Es29
Chain: e
Organism_scientific: Oryctolagus Cuniculus
Organism_common: Rabbit
Organism_taxid: 9986

Molecule: Es30
Chain: f
Organism_scientific: Oryctolagus Cuniculus
Organism_common: Rabbit
Organism_taxid: 9986

Molecule: Es31
Chain: g
Organism_scientific: Oryctolagus Cuniculus
Organism_common: Rabbit
Organism_taxid: 9986

Molecule: Rack1
Chain: h
Organism_scientific: Oryctolagus Cuniculus
Organism_common: Rabbit
Organism_taxid: 9986

Molecule: El41
Chain: n
Organism_scientific: Oryctolagus Cuniculus
Organism_common: Rabbit
Organism_taxid: 9986

Molecule: Iapv-Ires
Chain: 1
Engineered: Yes
Organism_scientific: Israeli Acute Paralysis Virus
Organism_taxid: 294365
Expression_system: Synthetic Construct
Expression_system_taxid: 32630
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.10 Å
Gene
Ontology
ChainFunctionProcessComponent
B


C


D


E


F


G


H


I


J


K


M


N


O


P


Q


R


S


T


U


V


W


X


Y


Z


a, L


b


c


d


e


f


g


n


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1600 Kb) [Save to disk]
  • Biological Unit Coordinates (6p4g.pdb1.gz) 1589 Kb
  • CSU: Contacts of Structural Units for 6P4G
  • Retrieve 6P4G in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6P4G from S2C, [Save to disk]
    • View 6P4G in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6P4G
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6p4g_h] [6p4g_1] [6p4g_f] [6p4g_B] [6p4g_Q] [6p4g_D] [6p4g_T] [6p4g_L] [6p4g_Z] [6p4g_a] [6p4g_c] [6p4g_F] [6p4g_W] [6p4g_U] [6p4g_J] [6p4g_P] [6p4g_n] [6p4g_2] [6p4g_X] [6p4g_K] [6p4g_V] [6p4g_N] [6p4g_S] [6p4g_Y] [6p4g_G] [6p4g_g] [6p4g_I] [6p4g_e] [6p4g_d] [6p4g_C] [6p4g_M] [6p4g_E] [6p4g_R] [6p4g_b] [6p4g_O] [6p4g_H]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6P4G
  • Community annotation for 6P4G at PDBWiki (http://pdbwiki.org)

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