6PGK Photosynthesis date Jun 24, 2019
title Membrane Protein Megahertz Crystallography At The European X Photosystem I Xfel At 2.9 A
authors R.Fromme, C.Gisriel, P.Fromme
compound source
Molecule: Photosystem I P700 Chlorophyll A Apoprotein A1
Chain: A, G, Y
Synonym: Psaa
Ec: 1.97.1.12
 Organism_scientific: Thermosynechococcus Elongatus (Strain
Organism_taxid: 197221
Strain: Bp-1

Molecule: Photosystem I P700 Chlorophyll A Apoprotein A2
Chain: B, H, Z
Synonym: Psab
Ec: 1.97.1.12
Organism_scientific: Thermosynechococcus Elongatus (Strain
Organism_taxid: 197221
Strain: Bp-1

Molecule: Photosystem I Iron-Sulfur Center
Chain: C, N, a
Synonym: 9 Kda Polypeptide,Psi-C,Photosystem I Subunit Vii,
Ec: 1.97.1.12
Organism_scientific: Thermosynechococcus Elongatus (Strain
Organism_taxid: 197221
Strain: Bp-1

Molecule: Photosystem I Reaction Center Subunit II
Chain: D, O, b
Synonym: Photosystem I 16 Kda Polypeptide,Psi-D
Organism_scientific: Thermosynechococcus Elongatus (Strain
Organism_taxid: 197221
Strain: Bp-1

Molecule: Photosystem I Reaction Center Subunit Iv
Chain: E, P, c
Synonym: Photosystem I 8.1 Kda Protein,P30 Protein
Organism_scientific: Thermosynechococcus Elongatus (Strain
Organism_taxid: 197221
Strain: Bp-1

Molecule: Photosystem I Reaction Center Subunit III
Chain: F, Q, d
Synonym: Psi-F
Organism_scientific: Thermosynechococcus Elongatus (Strain
Organism_taxid: 197221
Strain: Bp-1

Molecule: Photosystem I Reaction Center Subunit Viii
Chain: I, R, e
Organism_scientific: Thermosynechococcus Elongatus (Strain
Organism_taxid: 197221
Strain: Bp-1

Molecule: Photosystem I Reaction Center Subunit Ix
Chain: J, S, f
Organism_scientific: Thermosynechococcus Elongatus (Strain
Organism_taxid: 197221
Strain: Bp-1

Molecule: Photosystem I Reaction Center Subunit Psak
Chain: K, T, g
Synonym: Light-Harvesting 8.0 Kda Polypeptide,Photosystem I X;
Organism_scientific: Thermosynechococcus Elongatus (Strain
Organism_taxid: 197221
Strain: Bp-1

Molecule: Photosystem I Reaction Center Subunit Xi
Chain: L, U, h
Synonym: Psi Subunit V,Psi-L
Organism_scientific: Thermosynechococcus Elongatus (Strain
Organism_taxid: 197221
Strain: Bp-1

Molecule: Photosystem I Reaction Center Subunit Xii
Chain: M, V, I
Synonym: Psi-M
Organism_scientific: Thermosynechococcus Elongatus (Strain
Organism_taxid: 197221
Strain: Bp-1

Molecule: Photosystem I 4.8k Protein
Chain: W, X, j
Organism_scientific: Thermosynechococcus Elongatus (Strain
Organism_taxid: 197221
Strain: Bp-1
symmetry Space Group: P 1 21 1
R_factor 0.298 R_Free 0.336
crystal
cell
length a length b length c angle alpha angle beta angle gamma
279.100 164.600 284.100 90.00 119.25 90.00
method X-Ray Diffractionresolution 2.90 Å
ligand BCR, CA, CL0, CLA, LHG, LMG, PQN, SF4 enzyme Oxidoreductase E.C.1.97.1.12 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
E, c, P


S, J, f


T, K, g


U, h, L


V, M, i


Y, G, A
  • electron transfer activity


    • Z, B, H
  • electron transfer activity


    • a, N, C


    b, D, O


    d, F, Q


    e, I, R


    j, W, X


    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1583 Kb) [Save to disk]
  • Biological Unit Coordinates (6pgk.pdb1.gz) 1435 Kb
  • LPC: Ligand-Protein Contacts for 6PGK
  • CSU: Contacts of Structural Units for 6PGK
  • Structure Factors (14947 Kb)
  • Retrieve 6PGK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6PGK from S2C, [Save to disk]
    • View 6PGK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6PGK
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6pgk_Z] [6pgk_J] [6pgk_a] [6pgk_B] [6pgk_X] [6pgk_g] [6pgk_A] [6pgk_R] [6pgk_K] [6pgk_N] [6pgk_E] [6pgk_P] [6pgk_U] [6pgk_H] [6pgk_f] [6pgk_i] [6pgk_L] [6pgk_G] [6pgk_h] [6pgk_M] [6pgk_S] [6pgk_O] [6pgk_F] [6pgk_C] [6pgk_d] [6pgk_W] [6pgk_b] [6pgk_T] [6pgk_I] [6pgk_e] [6pgk_c] [6pgk_V] [6pgk_Q] [6pgk_D] [6pgk_Y] [6pgk_j]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6PGK
  • Community annotation for 6PGK at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science