6PMI | Transcription | date | Jul 02, 2019 |
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title | Sigm28-Transcription Initiation Complex With Specific Promot State 1 | ||||||||||||||||||||||||||
authors | B.Liu, W.Shi | ||||||||||||||||||||||||||
compound | source | ||||||||||||||||||||||||||
Molecule: Dna-Directed Rna Polymerase Subunit Alpha Chain: A, B Synonym: Rnap Subunit Alpha,Rna Polymerase Subunit Alpha, Transcriptase Subunit Alpha; Ec: 2.7.7.6 Engineered: Yes |
Organism_scientific: Escherichia Coli O157:H7 Organism_taxid: 83334 Gene: Rpoa, Z4665, Ecs4160 Expression_system: Escherichia Coli Expression_system_taxid: 562 | ||||||||||||||||||||||||||
Molecule: Dna-Directed Rna Polymerase Subunit Beta Chain: C Synonym: Rnap Subunit Beta,Rna Polymerase Subunit Beta,Tran Subunit Beta; Ec: 2.7.7.6 Engineered: Yes |
Organism_scientific: Escherichia Coli O45:K1 (Strain S88 Organism_taxid: 585035 Strain: S88 Expec Gene: Rpob, Ecs88_4448 Expression_system: Escherichia Coli Expression_system_taxid: 562 | ||||||||||||||||||||||||||
Molecule: Dna-Directed Rna Polymerase Subunit Beta' Chain: D Synonym: Rnap Subunit Beta',Rna Polymerase Subunit Beta', Transcriptase Subunit Beta'; Ec: 2.7.7.6 Engineered: Yes |
Organism_scientific: Escherichia Coli O157:H7 Organism_taxid: 83334 Gene: Rpoc, Z5561, Ecs4911 Expression_system: Escherichia Coli Expression_system_taxid: 562 | ||||||||||||||||||||||||||
Molecule: Dna-Directed Rna Polymerase Subunit Omega Chain: E Synonym: Rnap Omega Subunit,Rna Polymerase Omega Subunit, Transcriptase Subunit Omega; Ec: 2.7.7.6 Engineered: Yes |
Organism_scientific: Escherichia Coli O45:K1 (Strain S88 Organism_taxid: 585035 Strain: S88 Expec Gene: Rpoz, Ecs88_4064 Expression_system: Escherichia Coli Expression_system_taxid: 562 | ||||||||||||||||||||||||||
Molecule: Rna Polymerase Sigma Factor Flia Chain: F Synonym: Rna Polymerase Sigma Factor For Flagellar Operon,S Sigma-27,Sigma-28; Engineered: Yes |
Organism_scientific: Escherichia Coli (Strain K12) Organism_taxid: 83333 Strain: K12 Gene: Flia, Flad, Rpof, B1922, Jw1907 Expression_system: Escherichia Coli Expression_system_taxid: 562 | ||||||||||||||||||||||||||
Molecule: Synthetic Nontemplate Strand Dna (54-Mer) Chain: 1 Engineered: Yes |
Synthetic: Yes Organism_scientific: Escherichia Coli Organism_taxid: 562 | ||||||||||||||||||||||||||
Molecule: Synthetic Template Strand Dna (54-Mer) Chain: 2 Engineered: Yes |
Synthetic: Yes Organism_scientific: Escherichia Coli Organism_taxid: 562 | ||||||||||||||||||||||||||
Molecule: Nascent Rna Chain: 3 Engineered: Yes |
Synthetic: Yes Organism_scientific: Escherichia Coli Organism_taxid: 562 | ||||||||||||||||||||||||||
symmetry | Space Group: P 1 |
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crystal cell |
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method | Electron Microscopy | resolution | 3.86 Å | ||||||||||||||||||||||||
ligand | ATP, MG, ZN | enzyme | Transferase E.C.2.7.7.6 BRENDA | ||||||||||||||||||||||||
Gene Ontology |
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Primary reference | Structural basis of bacterial sigma(28) -mediated transcription reveals roles of the RNA polymerase zinc-binding domain., Shi W, Zhou W, Zhang B, Huang S, Jiang Y, Schammel A, Hu Y, Liu B, EMBO J. 2020 Jun 2:e104389. doi: 10.15252/embj.2020104389. PMID:32484956 |
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OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science |