6PMO Rna date Jul 02, 2019
title Co-Crystal Structure Of The Geobacillus Kaustophilus Glyq T- Riboswitch Discriminator Domain In Complex With Trna-Gly
authors S.Li, J.Zhang
compound source
Molecule: Trna-Gly
Chain: B
Engineered: Yes
Synthetic: Yes
Organism_scientific: Geobacillus Kaustophilus
Organism_taxid: 1462

Molecule: T-Box Riboswitch Discriminator
Chain: A
Engineered: Yes
Mutation: Yes
Other_details: In Vitro Transcribed, Unmodified Rna

Synthetic: Yes
Organism_scientific: Geobacillus Kaustophilus
Organism_taxid: 1462
symmetry Space Group: C 2 2 21
R_factor 0.225 R_Free 0.273
length a length b length c angle alpha angle beta angle gamma
44.851 139.913 136.023 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.66 Å
ligand IR, MG enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (125 Kb) [Save to disk]
  • Biological Unit Coordinates (6pmo.pdb1.gz) 119 Kb
  • LPC: Ligand-Protein Contacts for 6PMO
  • CSU: Contacts of Structural Units for 6PMO
  • Structure Factors (360 Kb)
  • Retrieve 6PMO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6PMO from S2C, [Save to disk]
  • View 6PMO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6PMO
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6pmo_B] [6pmo_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6PMO
  • Community annotation for 6PMO at PDBWiki (http://pdbwiki.org)

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