6PSS Transcription Dna date Jul 13, 2019
title Escherichia Coli Rna Polymerase Promoter Unwinding Intermedi (Trpi1.5a) With Trar And Mutant Rpst P2 Promoter
authors J.Chen, C.E.Chiu, E.A.Campbell, S.A.Darst
compound source
Molecule: Dna-Directed Rna Polymerase Subunit Alpha
Chain: G, H, M
Synonym: Rnap Subunit Alpha,Rna Polymerase Subunit Alpha, Transcriptase Subunit Alpha;
Ec: 2.7.7.6
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Rpoa, Pez, Phs, Sez, B3295, Jw3257
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008

Molecule: Dna-Directed Rna Polymerase Subunit Beta
Chain: I
Synonym: Rnap Subunit Beta,Rna Polymerase Subunit Beta,Tran Subunit Beta;
Ec: 2.7.7.6
Engineered: Yes

Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Rpob, Z5560, Ecs4910
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008

Molecule: Dna-Directed Rna Polymerase Subunit Beta'
Chain: J
Synonym: Rnap Subunit Beta',Rna Polymerase Subunit Beta', Transcriptase Subunit Beta';
Ec: 2.7.7.6
Engineered: Yes

Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Rpoc, Tabb, B3988, Jw3951
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008

Molecule: Dna-Directed Rna Polymerase Subunit Omega
Chain: K
Synonym: Rnap Omega Subunit,Rna Polymerase Omega Subunit, Transcriptase Subunit Omega;
Ec: 2.7.7.6
Engineered: Yes

Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Rpoz, Z5075, Ecs4524
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008

Molecule: Rna Polymerase Sigma Factor Rpod
Chain: L
Synonym: Sigma-70
Engineered: Yes

Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Rpod
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008

Molecule: Protein Trar
Chain: N
Synonym: Rna Polymerase Transcription Factor Trar
Engineered: Yes

Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Trar, Ecok12f083
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008

Molecule: Dna (85-Mer)
Chain: O
Engineered: Yes
Other_details: Template Strand Of Rpst P2 Dna Promoter

Synthetic: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562

Molecule: Dna (85-Mer)
Chain: P
Engineered: Yes
Other_details: Template Strand Of Rpst P2 Dna Promoter

Synthetic: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.50 Å
ligand MG, ZN enzyme Transferase E.C.2.7.7.6 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
H, M, G


I


J


K


L
  • bacterial sigma factor activ...


  • N


    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (583 Kb) [Save to disk]
  • Biological Unit Coordinates (6pss.pdb1.gz) 575 Kb
  • LPC: Ligand-Protein Contacts for 6PSS
  • CSU: Contacts of Structural Units for 6PSS
  • Retrieve 6PSS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6PSS from S2C, [Save to disk]
  • View 6PSS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6PSS
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6pss_I] [6pss_O] [6pss_G] [6pss_N] [6pss_P] [6pss_K] [6pss_M] [6pss_J] [6pss_H] [6pss_L]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6PSS
  • Community annotation for 6PSS at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science