6Q2B Transcription date Aug 07, 2019
title Crystal Structure Of Putative Marr Family Transcriptional Re From Listeria Monocytogenes Complexed With 26mer Dna
authors Y.Kim, C.Tesar, S.Clancy, A.Joachimiak, Midwest Center For Struc Genomics (Mcsg)
compound source
Molecule: Marr Family Transcriptional Regulator
Chain: A, B
Engineered: Yes
 Organism_scientific: Listeria Monocytogenes
Organism_taxid: 1639
Gene: Ars86_10905, D3b94_03315
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: Gold
Expression_system_vector_type: Plasmid

Molecule: Dna (26-Mer)
Chain: C, D
Engineered: Yes
Synthetic: Yes
Organism_scientific: Listeria Monocytogenes
Organism_taxid: 1639
symmetry Space Group: P 61
R_factor 0.232 R_Free 0.252
crystal
cell
length a length b length c angle alpha angle beta angle gamma
80.859 80.859 200.010 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.72 Å
ligand ACY, MSE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (161 Kb) [Save to disk]
  • Biological Unit Coordinates (6q2b.pdb1.gz) 153 Kb
  • LPC: Ligand-Protein Contacts for 6Q2B
  • CSU: Contacts of Structural Units for 6Q2B
  • Structure Factors (608 Kb)
  • Retrieve 6Q2B in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6Q2B from S2C, [Save to disk]
    • View 6Q2B in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6Q2B
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6q2b_A] [6q2b_B] [6q2b_D] [6q2b_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6Q2B
  • Community annotation for 6Q2B at PDBWiki (http://pdbwiki.org)

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